View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13302_high_13 (Length: 255)
Name: NF13302_high_13
Description: NF13302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13302_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1743466 - 1743708
Alignment:
| Q |
1 |
agtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggctatcgc |
100 |
Q |
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| T |
1743466 |
agtaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggctatcgc |
1743565 |
T |
|
| Q |
101 |
gaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaag |
200 |
Q |
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| T |
1743566 |
gaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaag |
1743665 |
T |
|
| Q |
201 |
attaatcaaatctaggtccaacccagattgtgaaatttgatga |
243 |
Q |
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| T |
1743666 |
attaatcaaatcaaggtccaacccagattgtgaaatttgatga |
1743708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 2006914 - 2006674
Alignment:
| Q |
3 |
taatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcactaccagatggctatcgcga |
102 |
Q |
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| T |
2006914 |
taatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcactaccagatggctatcgcaa |
2006815 |
T |
|
| Q |
103 |
agagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtgttctttggttggaaagat |
202 |
Q |
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| T |
2006814 |
agagagccaatgtttgagcaaatcaaaaccctcaggtttatcatctttgaaccgagctctcgcaatccatcaacaggaactgttctctggttggaaagat |
2006715 |
T |
|
| Q |
203 |
taatcaaatctaggtccaacccagattgtgaaatttgatga |
243 |
Q |
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| T |
2006714 |
taacgaaatcaaggtccagcccagattgtgaaacttgatga |
2006674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
158 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
198 |
Q |
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| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 44577603 - 44577567
Alignment:
| Q |
207 |
caaatctaggtccaacccagattgtgaaatttgatga |
243 |
Q |
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|||||| ||||||||||||| |||||||||||||||| |
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| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatga |
44577567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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