View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13302_low_16 (Length: 263)
Name: NF13302_low_16
Description: NF13302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13302_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 32450695 - 32450928
Alignment:
| Q |
17 |
atttattacctgtacacatatat--ttaaaatgtgttaaccatctactatattattttgatgtgaaatttataacataacttacatgaacaactgagtct |
114 |
Q |
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| T |
32450695 |
atttattacctgaacacatatatatttaaaatgtgtta-ccatctactatattattttgatgtgaaatttataacataacttacatgaacaactgagtct |
32450793 |
T |
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| Q |
115 |
cgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatgtcatcaatcacgttgaatcctctagctg |
214 |
Q |
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| T |
32450794 |
cgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatgtcatcaatcacgttgaatcctctagctg |
32450893 |
T |
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| Q |
215 |
aattattgttagccgctgctgttttctctcctatg |
249 |
Q |
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| T |
32450894 |
aattattgttagctgctgctgttttctctcctatg |
32450928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 87 - 249
Target Start/End: Original strand, 32424719 - 32424881
Alignment:
| Q |
87 |
aacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatg |
186 |
Q |
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||||||||| ||||||||||| ||||| || |||||||| | ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| |
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| T |
32424719 |
aacataactcacatgaacaacagagtcccgggcagccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatg |
32424818 |
T |
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| Q |
187 |
tcatcaatcacgttgaatcctctagctgaattattgttagccgctgctgttttctctcctatg |
249 |
Q |
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| T |
32424819 |
tcatcaatcacgttgaatcctctagctgaattattgttagcagctgctgttttttctcctatg |
32424881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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