View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13302_low_18 (Length: 227)
Name: NF13302_low_18
Description: NF13302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13302_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 3811426 - 3811611
Alignment:
| Q |
23 |
caacgattctattgctctagcctcgaactttaagttgtactgaaaagaatgagggcgagttgatttggatattgaatcttctcgagtgtaattggtttta |
122 |
Q |
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| T |
3811426 |
caacgattttattgctctagcctcgaactt-aagttgtactgaaaagaatgagggcgagttgatttggatattgaatcttctcgagtgtaattggtttta |
3811524 |
T |
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| Q |
123 |
gacggctctagaattgattataatttgaagttataatttacaatatttgtcaataaaattgtttagaattgatgaacattttcaacc |
209 |
Q |
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| T |
3811525 |
gaccgctctaaaattgattataatttgaagttataatttacaatatttgtcaataaaattgtttagaattgatgaacattttcaacc |
3811611 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 22271423 - 22271463
Alignment:
| Q |
131 |
tagaattgattataatttgaagttataatttacaatatttg |
171 |
Q |
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| T |
22271423 |
tagaattgattttaaattgaagttataatttacaatttttg |
22271463 |
T |
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