View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13302_low_2 (Length: 595)
Name: NF13302_low_2
Description: NF13302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13302_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 4 - 531
Target Start/End: Original strand, 6462370 - 6462897
Alignment:
| Q |
4 |
cgagtgagaagaaggacttggacctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttatnnnnnnnntggaagacaat |
103 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6462370 |
cgagtgaaaagaaggacttggacctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttataaaaaaaatggaagacaat |
6462469 |
T |
|
| Q |
104 |
aagaaagctgatgagaaggaagaactagaaatggaacaaagttggtgacgaggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6462470 |
aagaaagctgatgagaaggaagaactagaaatggaacaaagttggtgacgaggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaa |
6462569 |
T |
|
| Q |
204 |
gaggatgggaaaatgttggtaggaaagaaccagaagatgataagaaatattattttgtgaataaaacggaagaaaataagaaatgcgataatgggtttga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6462570 |
gaggatgggaaaatgttggtaggaaagaaccagaagatgataagaaatattattttgtgaataaaacggaagaaaataagaaatgcgataatgggtttga |
6462669 |
T |
|
| Q |
304 |
ggatgataaattgtgagaagaaacttaggttaaggaaactatgaatgtaaagaagagagagaaattgttgaagctaagaaatccgaattagaagtcatgg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6462670 |
ggatgataaattgtgagaagaaacttaggttaaggaaactatgaatgtaaagaagagagagaaattattgaagctaagaaatccgaattagaagtcatgg |
6462769 |
T |
|
| Q |
404 |
aagaaaagagtaaccctcaagacatagatcgggacaatgaaaaggagaaaaatcaagagaggacggattatcatgttaaggttaatgataagtcaaacga |
503 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || |
|
|
| T |
6462770 |
aagaagagagtatccctcaaaacatagatcgggacaatgaaaaggagaaaaatcaagagagggcggattatcaggttaaggttaatgataagtcaaatga |
6462869 |
T |
|
| Q |
504 |
tgaagataaggtacaagacaacttgttc |
531 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6462870 |
tgaagataaggtacaagacaacttgttc |
6462897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 461
Target Start/End: Original strand, 42252346 - 42252436
Alignment:
| Q |
371 |
ttgaagctaagaaatccgaattagaagtcatggaagaaaagagtaaccctcaagacatagatcgggacaatgaaaaggagaaaaatcaaga |
461 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||| || |||| |||||| ||| || || |||||||||||||| |||||| |
|
|
| T |
42252346 |
ttgaagctaagaaacccgaattagaagtcatggaagaagagattatccctgaagacaacgatgagggcagtgaaaaggagaaaagtcaaga |
42252436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 41847161 - 41847297
Alignment:
| Q |
3 |
tcgagtgagaagaaggacttgga-cctaagggaggaaaaatcttggaggataacgcagtcagagacttgattgaggatgttatnnnnnnnntggaagaca |
101 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||||||||||||| |||||||| || ||| ||| |||| ||||||| ||| |||||| |
|
|
| T |
41847161 |
tcgagtgaaaagaaggacctggaacctaagggaggaaaaatctttgaggataatgctgtccaagatttgaaagaggatggtataaaagcaatggaagttg |
41847260 |
T |
|
| Q |
102 |
ataagaaagctgatgagaaggaagaactagaaatgga |
138 |
Q |
| |
|
||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
41847261 |
ataagaaagctgatggggaggaagtactagaaatgga |
41847297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 42252149 - 42252209
Alignment:
| Q |
155 |
ggaaggaatgaaagaggataagaaagttgacaaagggaaataattaaaagaggatgggaaa |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| || ||||||||||| |||| |
|
|
| T |
42252149 |
ggaaggaataaaagaggataagaaagttgatgaagggaaagaaacaaaagaggatgagaaa |
42252209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 41847894 - 41847959
Alignment:
| Q |
350 |
gtaaagaagagagagaaattgttgaagctaagaaatccgaattagaagtcatggaagaaaagagta |
415 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||||| | |||||| ||| |||||| |
|
|
| T |
41847894 |
gtaaagaagagagagaaagcgttgaagctaagaagcctgaattagatgccatggatgaagagagta |
41847959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 42252239 - 42252292
Alignment:
| Q |
255 |
attttgtgaataaaacggaagaaaataagaaatgcgataatgggtttgaggatg |
308 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
42252239 |
attttgtgaatgaaacagaagaaaataagaaaaatgatcatgggtttgaggatg |
42252292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University