View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13302_low_3 (Length: 540)

Name: NF13302_low_3
Description: NF13302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13302_low_3
NF13302_low_3
[»] chr4 (31 HSPs)
chr4 (228-540)||(5162689-5163002)
chr4 (228-540)||(5184521-5184827)
chr4 (18-200)||(5184312-5184493)
chr4 (78-200)||(5162540-5162661)
chr4 (354-451)||(55264632-55264729)
chr4 (376-518)||(53924391-53924530)
chr4 (354-449)||(55264380-55264474)
chr4 (371-485)||(54090992-54091106)
chr4 (376-449)||(40942585-40942658)
chr4 (372-512)||(54458706-54458846)
chr4 (372-451)||(33614384-33614463)
chr4 (372-451)||(39051328-39051406)
chr4 (354-445)||(44137371-44137462)
chr4 (377-451)||(11383032-11383105)
chr4 (374-451)||(40942675-40942752)
chr4 (357-449)||(13432756-13432847)
chr4 (354-449)||(13302119-13302213)
chr4 (370-449)||(25500468-25500546)
chr4 (376-423)||(45921893-45921940)
chr4 (404-519)||(49448188-49448303)
chr4 (78-192)||(5138715-5138828)
chr4 (354-451)||(7403260-7403357)
chr4 (374-434)||(3465389-3465449)
chr4 (372-444)||(39493771-39493843)
chr4 (372-451)||(13119381-13119460)
chr4 (374-429)||(39051105-39051160)
chr4 (468-519)||(45921830-45921881)
chr4 (354-449)||(55284053-55284148)
chr4 (361-451)||(54458602-54458692)
chr4 (411-451)||(13119230-13119270)
chr4 (366-442)||(56087588-56087664)
[»] chr5 (21 HSPs)
chr5 (372-449)||(36184738-36184815)
chr5 (368-449)||(11275790-11275871)
chr5 (394-451)||(31065868-31065925)
chr5 (378-451)||(36184522-36184595)
chr5 (357-445)||(20399012-20399100)
chr5 (376-451)||(5971891-5971966)
chr5 (366-451)||(9637755-9637837)
chr5 (380-425)||(987328-987373)
chr5 (360-449)||(31046143-31046231)
chr5 (376-449)||(33676544-33676617)
chr5 (388-451)||(8285238-8285301)
chr5 (372-451)||(33391514-33391593)
chr5 (373-486)||(11275659-11275772)
chr5 (360-449)||(31051204-31051292)
chr5 (407-451)||(4902220-4902264)
chr5 (389-445)||(27354306-27354362)
chr5 (366-449)||(8840022-8840105)
chr5 (436-519)||(9900261-9900344)
chr5 (372-445)||(31066088-31066161)
chr5 (368-401)||(32508922-32508955)
chr5 (354-418)||(12640244-12640308)
[»] chr7 (15 HSPs)
chr7 (360-451)||(42709905-42709996)
chr7 (374-519)||(30935271-30935416)
chr7 (390-449)||(21248998-21249057)
chr7 (382-449)||(26752017-26752084)
chr7 (354-451)||(41008922-41009019)
chr7 (372-451)||(12427833-12427912)
chr7 (374-518)||(10524976-10525114)
chr7 (372-451)||(3248320-3248399)
chr7 (374-485)||(16830294-16830405)
chr7 (374-450)||(36478535-36478611)
chr7 (357-444)||(3248445-3248532)
chr7 (360-451)||(35660967-35661058)
chr7 (373-419)||(16810449-16810495)
chr7 (391-451)||(6026-6086)
chr7 (387-415)||(39392564-39392592)
[»] chr1 (25 HSPs)
chr1 (372-519)||(6219625-6219772)
chr1 (374-451)||(38783894-38783971)
chr1 (361-451)||(10595501-10595591)
chr1 (354-451)||(10377546-10377643)
chr1 (372-445)||(28504711-28504784)
chr1 (372-419)||(8792967-8793014)
chr1 (354-448)||(46410826-46410920)
chr1 (375-451)||(27293283-27293359)
chr1 (370-429)||(6219772-6219831)
chr1 (354-449)||(34835720-34835815)
chr1 (377-451)||(34835593-34835667)
chr1 (392-449)||(7790300-7790357)
chr1 (388-445)||(15395209-15395266)
chr1 (374-451)||(27562671-27562748)
chr1 (382-454)||(50147230-50147302)
chr1 (357-451)||(23399510-23399607)
chr1 (374-437)||(27293426-27293489)
chr1 (373-419)||(6061613-6061659)
chr1 (407-449)||(15395431-15395473)
chr1 (357-419)||(40650043-40650104)
chr1 (354-403)||(844627-844676)
chr1 (390-451)||(4066923-4066984)
chr1 (378-451)||(7790411-7790483)
chr1 (361-446)||(38576563-38576648)
chr1 (366-449)||(46410638-46410722)
[»] chr6 (14 HSPs)
chr6 (372-435)||(9530547-9530610)
chr6 (372-451)||(19121854-19121933)
chr6 (354-451)||(3960852-3960949)
chr6 (354-429)||(21394236-21394311)
chr6 (372-513)||(3889971-3890113)
chr6 (372-424)||(30747944-30747996)
chr6 (372-483)||(3960721-3960832)
chr6 (374-451)||(19121985-19122062)
chr6 (372-451)||(21394490-21394568)
chr6 (409-451)||(5656578-5656620)
chr6 (374-423)||(21969302-21969351)
chr6 (392-429)||(24794190-24794227)
chr6 (414-451)||(26330227-26330264)
chr6 (390-422)||(6782912-6782944)
[»] chr3 (19 HSPs)
chr3 (372-451)||(39840659-39840738)
chr3 (354-451)||(55447182-55447279)
chr3 (354-444)||(16298174-16298264)
chr3 (371-445)||(33075275-33075349)
chr3 (360-451)||(45965804-45965895)
chr3 (373-451)||(40472831-40472909)
chr3 (372-449)||(20124246-20124322)
chr3 (354-519)||(29504832-29504997)
chr3 (374-451)||(39840892-39840969)
chr3 (374-449)||(33429121-33429196)
chr3 (378-444)||(1431476-1431542)
chr3 (371-428)||(27812204-27812261)
chr3 (372-449)||(42045771-42045848)
chr3 (377-449)||(29504774-29504846)
chr3 (373-429)||(40860973-40861029)
chr3 (385-449)||(41709291-41709355)
chr3 (374-445)||(31300371-31300442)
chr3 (386-428)||(3910245-3910287)
chr3 (371-445)||(45965672-45965746)
[»] scaffold0137 (1 HSPs)
scaffold0137 (366-451)||(17094-17179)
[»] chr8 (15 HSPs)
chr8 (374-518)||(33229497-33229635)
chr8 (355-449)||(10028876-10028970)
chr8 (354-451)||(10028633-10028730)
chr8 (366-451)||(10028737-10028822)
chr8 (371-429)||(5840352-5840410)
chr8 (376-451)||(29490376-29490451)
chr8 (388-438)||(23768775-23768825)
chr8 (405-451)||(33229620-33229666)
chr8 (372-449)||(21136587-21136664)
chr8 (376-519)||(21136650-21136793)
chr8 (392-451)||(29490606-29490665)
chr8 (374-428)||(41424410-41424464)
chr8 (373-454)||(5840961-5841042)
chr8 (390-451)||(32029639-32029700)
chr8 (370-450)||(23961644-23961724)
[»] chr2 (18 HSPs)
chr2 (354-451)||(17658758-17658855)
chr2 (371-518)||(6511016-6511163)
chr2 (380-451)||(22191390-22191461)
chr2 (354-438)||(22191527-22191611)
chr2 (354-445)||(32013984-32014075)
chr2 (376-451)||(32503046-32503121)
chr2 (376-451)||(33940037-33940112)
chr2 (354-429)||(17672926-17673001)
chr2 (354-417)||(35736709-35736772)
chr2 (370-416)||(18561610-18561656)
chr2 (376-428)||(2451166-2451218)
chr2 (372-451)||(6511148-6511225)
chr2 (354-429)||(17627854-17627929)
chr2 (377-428)||(41440020-41440071)
chr2 (394-451)||(8033878-8033935)
chr2 (354-451)||(8257561-8257658)
chr2 (360-429)||(17184764-17184833)
chr2 (367-451)||(32502807-32502891)
[»] scaffold0022 (2 HSPs)
scaffold0022 (357-445)||(122547-122635)
scaffold0022 (361-451)||(62678-62768)
[»] scaffold0198 (2 HSPs)
scaffold0198 (354-420)||(11907-11973)
scaffold0198 (368-420)||(11542-11594)
[»] scaffold0528 (1 HSPs)
scaffold0528 (360-449)||(1649-1737)
[»] scaffold0252 (1 HSPs)
scaffold0252 (403-451)||(19789-19837)
[»] scaffold0154 (1 HSPs)
scaffold0154 (360-451)||(6220-6311)
[»] scaffold0066 (1 HSPs)
scaffold0066 (376-451)||(11992-12067)
[»] scaffold0340 (2 HSPs)
scaffold0340 (374-451)||(10875-10952)
scaffold0340 (372-449)||(11006-11083)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 228 - 540
Target Start/End: Original strand, 5162689 - 5163002
Alignment:
Q  228 ctgttttttactcgagagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttag 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162689 ctgttttttactcgagagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttag 5162788  T
Q  328 ttttcttttgttaataat-aattcttcaaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaatta 426  Q
    ||||||||||| | |||| ||||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||    
T  5162789 ttttcttttgtcattaattaattcttcaaccaccaaatcgggtcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaatta 5162888  T
Q  427 gtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaagtgctttt 526  Q
    ||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5162889 gtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaagtgctttt 5162988  T
Q  527 gtaagtaattcatt 540  Q
    ||||||||||||||    
T  5162989 gtaagtaattcatt 5163002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 228 - 540
Target Start/End: Original strand, 5184521 - 5184827
Alignment:
Q  228 ctgttttttactcgagagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttag 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184521 ctgttttttactcgagagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttag 5184620  T
Q  328 ttttcttttgttaataataattcttcaaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattag 427  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||    |||| ||  ||||||||| || |||||| ||||||||||| ||||||     
T  5184621 ttttcttttgtcaataataattcttcaagcaccaaatcggtccatgtc----taagcca--ctcaaattaatcactaactctattaatatttcaaattat 5184714  T
Q  428 tcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaagtgcttttg 527  Q
    ||| | | ||| ||||||||||||||||||||| | ||||||||||||||||||||||| | ||||  |||||| |||||||||| || |||||||||||    
T  5184715 tcattttttttatcaaaagtttctgaaccagatccttcgacatgtgacaaaaacataaagaaaaggttctaattgacaaacttttgactaagtgcttttg 5184814  T
Q  528 taagtaattcatt 540  Q
    |||||||||||||    
T  5184815 taagtaattcatt 5184827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 5184312 - 5184493
Alignment:
Q  18 gtttgtgtgatgtacttatctggagaactttgaagatattgtgatatattatttttgaagatccaagagttcctcaaatagctctgagacctgtttcaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184312 gtttgtgtgatgtacttatctggagaactttgaagatattgtgatatattatttttgaagatccaagagttcctcaaatagctctgagacctgtttcaaa 5184411  T
Q  118 gatccatcaaatgaagtatggaattcctctggattttctgcagccattgattctgtgacaggccctatgctagagtattattg 200  Q
    |||||||||||||| ||   | |  ||  ||      | ||||||||||||||||||||||||||||||||||||||||||||    
T  5184412 gatccatcaaatgacgttctgca-gccattgacccggcagcagccattgattctgtgacaggccctatgctagagtattattg 5184493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 5162540 - 5162661
Alignment:
Q  78 atccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgaagtatggaattcctctggattttctgcagccattgattctgtgaca 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   | |  ||  ||      | |||||||||||||||||||||    
T  5162540 atccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgacgttctgca-gccattgacccggcagcagccattgattctgtgaca 5162638  T
Q  178 ggccctatgctagagtattattg 200  Q
    |||||||||||||||||||||||    
T  5162639 ggccctatgctagagtattattg 5162661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 354 - 451
Target Start/End: Complemental strand, 55264729 - 55264632
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||| | |||||||||||||  |||| |||||||||||||||||| | | ||||||||||| |||  ||||  ||||||||||||||||||||    
T  55264729 aaccaccaatttggtccatgtctttacaagtgactctcaaattagtctctgaatctattaatatttcaaaagagtctgtgtctttgtcaaaagtttct 55264632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 518
Target Start/End: Original strand, 53924391 - 53924530
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgac 475  Q
    |||||||||||| ||||||||||| | | ||| ||||||||    ||| |||||| |||||||||||||||||||| ||  |  ||||||  ||||||||    
T  53924391 tttgtaagtcaccctcaaattagtatgtgactctattaatac---aaactagtcattgtctttgtcaaaagtttctcaattacgttcctcaccatgtgac 53924487  T
Q  476 aaaaacataaatacaaggacctaattaacaaacttttaacaaa 518  Q
    ||||||||||| |||| || |||||| | |||||||| |||||    
T  53924488 aaaaacataaagacaatgatctaattgaaaaacttttgacaaa 53924530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 354 - 449
Target Start/End: Original strand, 55264380 - 55264474
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||| ||||  ||||||| ||||||||| |||| |||||| || ||| ||||||||||| ||| |||||| ||||||||||||||||||    
T  55264380 aaccaccaaattggtcg-tgtctttataagtcactttcaatttagtcactgactctattaatatttcaaaatagtcattgtctttgtcaaaagttt 55264474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 485
Target Start/End: Complemental strand, 54091106 - 54090992
Alignment:
Q  371 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacat 470  Q
    ||||| |||||||||| |||||||||||||  | |||  |||||||||||||| ||||   |||||||||| ||||||||| ||  || | ||||| |||    
T  54091106 atgtcgttgtaagtcattctcaaattagtcattgactcaattaatattttaaactagtatatgtctttgtccaaagtttctcaattaggtccctcgtcat 54091007  T
Q  471 gtgacaaaaacataa 485  Q
    |||||||||||||||    
T  54091006 gtgacaaaaacataa 54090992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 449
Target Start/End: Original strand, 40942585 - 40942658
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||||  ||| ||||||||||| ||| | ||||||||||||||||| |||||| ||||||||||||||||||    
T  40942585 tttgtaaaccaccctcaaattagtgtctgattttattaatattttaaactagtcattgtctttgtcaaaagttt 40942658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 512
Target Start/End: Complemental strand, 54458846 - 54458706
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatg 471  Q
    |||||||||| | |||||| |||||| |||| |||| ||||||||||| ||| || |  ||||||||||||||||| |||  |  || | |||||  |||    
T  54458846 tgtctttgtaggccactcttaaattaatctcaaactctattaatatttcaaactaatatctgtctttgtcaaaagtgtctcgattaggtccctcgttatg 54458747  T
Q  472 tgacaaaaacataaatacaaggacctaattaacaaactttt 512  Q
    |||||||||||| || ||||||| |||||| | ||||||||    
T  54458746 tgacaaaaacattaagacaaggatctaattgagaaactttt 54458706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 33614463 - 33614384
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||| |  |||||||||||||||  | ||||||||||||||| ||| ||||| ||||||||| |||||||||||    
T  33614463 tgtctttgtaggagactctcaaattagtccatgactttattaatatttcaaactagtctctgtctttgacaaaagtttct 33614384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 39051406 - 39051328
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||| ||| ||||| | |||||||| | | ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  39051406 tgtctttataaatcacttttaaattagt-tatgactctattaatattttaaaatagtcactgtctttgtcaaaagtttct 39051328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 445
Target Start/End: Original strand, 44137371 - 44137462
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    ||||||||| | ||||| | | ||||||||| | |||||||||||||||| ||| ||||||||||| ||| ||||  |||||||||||||||    
T  44137371 aaccaccaatttggtccttatttttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtatctgtctttgtcaaaa 44137462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 451
Target Start/End: Complemental strand, 11383105 - 11383032
Alignment:
Q  377 ttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||| | | |||||||||||| | |||||| |||||||||||| |||||| ||||||||||||||||||||    
T  11383105 ttgtaagtgattatcaaattagtctatgactttagtaatattttaaaatagtca-tgtctttgtcaaaagtttct 11383032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 451
Target Start/End: Complemental strand, 40942752 - 40942675
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||  | | |||||||||| | ||| |||||||||||||||||||||  ||| ||||||||||||||||    
T  40942752 tctttgtaagtcgtttttaaattagtctatgactatattaatattttaaattagtctttgtttttgtcaaaagtttct 40942675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 449
Target Start/End: Complemental strand, 13432847 - 13432756
Alignment:
Q  357 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||||| | ||| ||||||||||||||| |||||||||||||| |   | |||||| |||||||| ||||| ||| |||||||||||||||    
T  13432847 caccaaattgatccctgtctttgtaagtcattctcaaattagtctatgcttctattaacattttaaa-tagtctctgactttgtcaaaagttt 13432756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 449
Target Start/End: Original strand, 13302119 - 13302213
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||| | ||| ||||||||||||||| ||||||||||||| ||   | |||||| |||| ||| ||||| |||||||| ||||||||||    
T  13302119 aaccaccaaattgatccctgtctttgtaagtcattctcaaattagtccctgcttctattaacatttcaaa-tagtctctgtctttttcaaaagttt 13302213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 449
Target Start/End: Complemental strand, 25500546 - 25500468
Alignment:
Q  370 catgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||| |||| ||||||| ||||||||||||| || |||||| |||| |||||||||| ||| ||| ||||||||||||||    
T  25500546 catgcctttctaagtcattctcaaattagtcactgactttaataat-ttttaaattaatcattgtttttgtcaaaagttt 25500468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 45921940 - 45921893
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaa 423  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  45921940 tttgtaagtcattctcgaattagtctctgactttattaatattttaaa 45921893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 519
Target Start/End: Complemental strand, 49448303 - 49448188
Alignment:
Q  404 aactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgacaaaaacataaatacaaggacctaattaa 503  Q
    |||| ||||||||||| ||| |||||  |||||||||||||||||| | ||  ||||  |||| ||| ||||||||||||||| |||  || |||||| |    
T  49448303 aactatattaatatttcaaactagtctttgtctttgtcaaaagtttatcaattagatcgctcgtcatatgacaaaaacataaagacagtgatctaattga 49448204  T
Q  504 caaacttttaacaaag 519  Q
     |||||||| ||||||    
T  49448203 gaaacttttgacaaag 49448188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 5138828 - 5138715
Alignment:
Q  78 atccaagagttcctcaaatagctctgagacctgtttcaaagatccatcaaatgaagtatggaattcctctggattttctgcagccattgattctgtgaca 177  Q
    |||||||||||||||||||||||||| || ||  ||||||||   |||||||||||| | ||||||||||| |   |||||||| | |||| |||||| |    
T  5138828 atccaagagttcctcaaatagctctg-gaacttgttcaaagactgatcaaatgaagtcttgaattcctctgcaagctctgcagctactgatcctgtgata 5138730  T
Q  178 ggccctatgctagag 192  Q
    || ||||||| ||||    
T  5138729 ggtcctatgccagag 5138715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 451
Target Start/End: Complemental strand, 7403357 - 7403260
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||| ||||||||| |||||||||||||   | | |||||||| ||  | ||||||||||||||||||  || |||||||||| || ||||||||||    
T  7403357 aaccatcaaatcggttcatgtctttgtaatgtattttcaaattaatccttgactttattaatattttaatataatcactgtcttggttaaaagtttct 7403260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 3465389 - 3465449
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgt 434  Q
    ||||||||| ||| ||| |||||||| | | ||||||||||||||||||||||||| ||||    
T  3465389 tctttgtaattcattcttaaattagtatatgactttattaatattttaaattagtctctgt 3465449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 444
Target Start/End: Complemental strand, 39493843 - 39493771
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaa 444  Q
    ||||||| ||| ||||| | ||||| |||||||| | ||||||||||||||||||||   |||||||||||||    
T  39493843 tgtctttttaactcacttttaaattcgtctctaattctattaatattttaaattagtgcatgtctttgtcaaa 39493771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 13119460 - 13119381
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||| | | | |||||||||| | | ||| ||||||||||| ||| ||||| |||||||||| ||||||||||    
T  13119460 tgtctttgtaaatgattatcaaattagtttatgactctattaatatttcaaaatagtccctgtctttgttaaaagtttct 13119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 429
Target Start/End: Original strand, 39051105 - 39051160
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 429  Q
    |||||||||||||||||||||||||||  | | | ||||||||||||||| |||||    
T  39051105 tctttgtaagtcactctcaaattagtcattgattctattaatattttaaaatagtc 39051160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 45921830 - 45921881
Alignment:
Q  468 catgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaag 519  Q
    ||||||||||||||||||| |||| ||||||||| | |||||||| ||||||    
T  45921830 catgtgacaaaaacataaagacaatgacctaattgataaacttttgacaaag 45921881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 449
Target Start/End: Complemental strand, 55284148 - 55284053
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||||||||  ||| |||| ||| ||||||| | | |||||||||||||| | ||||||||||| ||  ||||  ||||||||| |||||||||    
T  55284148 aaccaccaaattagtctatgtttttataagtcattattaaattagtctctaattctattaatatttcaatctagtttctgtctttgccaaaagttt 55284053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 451
Target Start/End: Original strand, 54458602 - 54458692
Alignment:
Q  361 aaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||| ||||||| ||||||||| ||| |||||| |||||| |  ||||||||||||||| ||| || ||  ||| | ||||||||||||||    
T  54458602 aaattggtccatatctttgtaaatcattctcaatttagtccccgactttattaatatttcaaactaatctatgtttatgtcaaaagtttct 54458692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 13119230 - 13119270
Alignment:
Q  411 ttaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||| ||| ||||| |||||||||||||||||||||    
T  13119230 ttaatatttcaaaatagtcgctgtctttgtcaaaagtttct 13119270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 442
Target Start/End: Original strand, 56087588 - 56087664
Alignment:
Q  366 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtca 442  Q
    ||||||| | ||||||||  ||||| |||||||| ||| | | |||||||||||||||||| || |||| |||||||    
T  56087588 ggtccatatatttgtaagcaactctaaaattagtgtctcattctattaatattttaaattaatctctgtatttgtca 56087664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 36184815 - 36184738
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||    
T  36184815 tgtctttgtaaatcactctcaaattagtctctaactctattagtatttcaaaatagtcactgtctttgtcaaaagttt 36184738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 11275871 - 11275790
Alignment:
Q  368 tccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||  || | ||||||||||||||    
T  11275871 tccatgtctttgtaaatcattctcaaattagtctctgactttattaatattttaaattagtttctatatttgtcaaaagttt 11275790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 31065868 - 31065925
Alignment:
Q  394 attagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||||||    
T  31065868 attagtctctaactctattaatatttcaaaatagtcattgtctttgtcaaaagtttct 31065925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 36184522 - 36184595
Alignment:
Q  378 tgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| || ||| | ||| |||||||| |||||    
T  36184522 tgtaagtcactctcaaattagtctataactttattaatatttcaaaataatcattatctatgtcaaaaatttct 36184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 445
Target Start/End: Complemental strand, 20399100 - 20399012
Alignment:
Q  357 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    |||||||| ||||| | |||||||||| || ||||||||||||| || ||| ||||||||||| |||||||||  ||||||||| ||||    
T  20399100 caccaaattggtccctatctttgtaagacattctcaaattagtccctgactctattaatatttcaaattagtccttgtctttgtaaaaa 20399012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 5971966 - 5971891
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||| | ||| |||||||||  ||| ||||||||||||||| |||||| |||||||||||||| |||||    
T  5971966 tttgtaagtcattttcagattagtctcagactctattaatattttaaactagtcattgtctttgtcaaaactttct 5971891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 9637837 - 9637755
Alignment:
Q  366 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||| ||||||||||||| | ||||||||||||| |||||| |||   ||||||||| | |||| ||||||||||||||||||||    
T  9637837 ggtccgtgtctttgtaagtgattctcaaattagtccctaactctat---tattttaaaatggtcaatgtctttgtcaaaagtttct 9637755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 425
Target Start/End: Complemental strand, 987373 - 987328
Alignment:
Q  380 taagtcactctcaaattagtctctaactttattaatattttaaatt 425  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||    
T  987373 taagtcactctcaaattagtctataactctattaatattttaaatt 987328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 449
Target Start/End: Complemental strand, 31046231 - 31046143
Alignment:
Q  360 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||||||| |||||||||||||| | ||||||||||  |||  ||| ||||||||||||||| |||||  || |||||||||||||||    
T  31046231 caaatcggtc-atgtctttgtaagtgattctcaaattatcctccgactctattaatattttaaaatagtctatgcctttgtcaaaagttt 31046143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 449
Target Start/End: Original strand, 33676544 - 33676617
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||| | ||| |||||| ||| ||||||||||||||||||||| || ||||||| ||| ||||||||||    
T  33676544 tttgtaagttattcttaaattaatctataactttattaatattttaaaataatcactgtttttatcaaaagttt 33676617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 8285301 - 8285238
Alignment:
Q  388 tctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||| || ||| ||||||||||||||| |||||  | ||||||||||||||||||    
T  8285301 tctcaaattagtccctgactatattaatattttaaaatagtctatatctttgtcaaaagtttct 8285238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 33391593 - 33391514
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||| | ||||||||||||| ||   ||||| ||||| ||||||||| || ||||| ||||||||||||    
T  33391593 tgtctttgtaagtcattatcaaattagtctcaaaaactattagtatttcaaattagtccctatctttatcaaaagtttct 33391514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 486
Target Start/End: Original strand, 11275659 - 11275772
Alignment:
Q  373 gtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgt 472  Q
    |||||||||  ||| ||| |||||||||  | | |||||||||||||| || |||||  |||||||||||||||||||| ||   ||| ||| | | |||    
T  11275659 gtctttgtagatcattctaaaattagtccatgattttattaatattttcaactagtctttgtctttgtcaaaagtttctcaatttgatccctagtcgtgt 11275758  T
Q  473 gacaaaaacataaa 486  Q
    ||||||||||||||    
T  11275759 gacaaaaacataaa 11275772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 449
Target Start/End: Complemental strand, 31051292 - 31051204
Alignment:
Q  360 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||| ||||||||||||| | ||||||||||| | |  ||| || |||||||||||| ||||| |||  ||||||||||||||    
T  31051292 caaatcggtcc-tgtctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtctctgcttttgtcaaaagttt 31051204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 4902220 - 4902264
Alignment:
Q  407 tttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||||||||||| || |||||| |||||||||||    
T  4902220 tttattaatattttaaattagtccctatctttgccaaaagtttct 4902264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 27354306 - 27354362
Alignment:
Q  389 ctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    |||||||||||| |||||| ||||||||||||||| ||||| |||| ||||| ||||    
T  27354306 ctcaaattagtccctaactatattaatattttaaaatagtctctgtttttgttaaaa 27354362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 8840105 - 8840022
Alignment:
Q  366 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||| ||| ||||||||  | ||||| ||||||| |  ||| ||||||||||| ||| ||||| |||||||||||||||||||    
T  8840105 ggtccctgtatttgtaagggattctcagattagtccccgactctattaatatttcaaaatagtccctgtctttgtcaaaagttt 8840022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 519
Target Start/End: Complemental strand, 9900344 - 9900261
Alignment:
Q  436 tttgtcaaaagtttctgaaccagattcctcgacatgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaag 519  Q
    |||||||||| ||||| ||  | || ||| ||||||||||||||||||| |||||| || |||||| | |||||||| ||||||    
T  9900344 tttgtcaaaaatttctcaattaaatcccttgacatgtgacaaaaacatagatacaaagatctaattgagaaacttttgacaaag 9900261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 31066161 - 31066088
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    ||||||||||||| | ||| ||||||| | |  ||| ||||||||||||||| ||||| |||||||| ||||||    
T  31066161 tgtctttgtaagtgattcttaaattagcccccgactctattaatattttaaaatagtctctgtctttatcaaaa 31066088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 32508955 - 32508922
Alignment:
Q  368 tccatgtctttgtaagtcactctcaaattagtct 401  Q
    ||||||| ||||||||||||||||||||||||||    
T  32508955 tccatgtttttgtaagtcactctcaaattagtct 32508922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 12640308 - 12640244
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatatt 418  Q
    ||||| ||||| ||||| ||||||||||||| | ||||||||||||| || | | ||||||||||    
T  12640308 aaccatcaaattggtccctgtctttgtaagtgattctcaaattagtcactgaatctattaatatt 12640244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 451
Target Start/End: Original strand, 42709905 - 42709996
Alignment:
Q  360 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||| ||||| ||||||||||||| | |||||||| ||||||  ||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  42709905 caaattggtccctgtctttgtaagtgattctcaaatcagtctccgactctattaatattttaaaatagtcaatgtctttgtcaaaagtttct 42709996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 519
Target Start/End: Complemental strand, 30935416 - 30935271
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtg 473  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| ||| || || || ||||||||||||     | ||  || | ||||| ||||||    
T  30935416 tctttgtaagtcactctcaaattagtctccgactttattaatatttcaaactaatccctatctttgtcaaaaaaaattcaattaggtccctcgtcatgtg 30935317  T
Q  474 acaaaaacataaatacaaggacctaattaacaaacttttaacaaag 519  Q
    ||||||||||||| | ||||| |||| | | |||||||| ||||||    
T  30935316 acaaaaacataaagataaggatctaagtgaaaaacttttgacaaag 30935271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 21249057 - 21248998
Alignment:
Q  390 tcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||||||| ||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  21249057 tcaaattagtttctaactttattaatattttaaattagtctccatctttgtcaaaagttt 21248998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 382 - 449
Target Start/End: Complemental strand, 26752084 - 26752017
Alignment:
Q  382 agtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||||||||||||||||||| ||||| ||| ||||||||| |||||  ||||||||||||||||||    
T  26752084 agtcactctcaaattagtctctgactttgttattattttaaaatagtctttgtctttgtcaaaagttt 26752017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 451
Target Start/End: Complemental strand, 41009019 - 41008922
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||| | ||||  ||| ||||||||||| | |||||||| ||||| ||| ||||||||||||||| ||||| || ||||||| ||||||||||    
T  41009019 aaccaccaacttggtcactgtttttgtaagtcattttcaaattaatctctgactctattaatattttaaaatagtctctatctttgttaaaagtttct 41008922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 451
Target Start/End: Original strand, 12427833 - 12427912
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||| ||||||||||||   | ||| |||||||||||||||||||||| | |||||| ||||| |||||    
T  12427833 tgtctttgtaagtcattctcaaattagttcatgactctattaatattttaaattagtcattatctttgccaaaaatttct 12427912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 518
Target Start/End: Complemental strand, 10525114 - 10524976
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtg 473  Q
    ||||||||||||||||||||||| ||| |  ||  ||||||||||| ||| |||||      |||||||||||||||| ||  || | ||||| ||||||    
T  10525114 tctttgtaagtcactctcaaatttgtccccgaccctattaatatttcaaactagtc------tttgtcaaaagtttctcaattaggtccctcgtcatgtg 10525021  T
Q  474 acaaaaacataaatacaaggacctaattaacaaacttttaacaaa 518  Q
    ||||||||||||| | | ||| |||||| | |||||||| |||||    
T  10525020 acaaaaacataaagatagggatctaattgagaaacttttgacaaa 10524976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 451
Target Start/End: Original strand, 3248320 - 3248399
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||||  | ||||||||||||| ||| ||||||||||||| | ||| ||||  |||||||||||||| ||||||    
T  3248320 tgtctttgtaacccgctctcaaattagtatctgactttattaatatctcaaaatagtttctgtctttgtcaaatgtttct 3248399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 485
Target Start/End: Original strand, 16830294 - 16830405
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtg 473  Q
    |||||||||||||||||||||||||| || || | ||||||||||  ||| ||||   ||||||||||| |||||||| ||  || | | ||| |||||     
T  16830294 tctttgtaagtcactctcaaattagtgtcaaattctattaatattccaaactagtgcatgtctttgtcataagtttctcaattaggtccatcgtcatgta 16830393  T
Q  474 acaaaaacataa 485  Q
    ||||||||||||    
T  16830394 acaaaaacataa 16830405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 450
Target Start/End: Complemental strand, 36478611 - 36478535
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttc 450  Q
    ||||| ||||||| |||||||||||| | ||||||||| ||||||| |||||||| | |  |||||||||| |||||    
T  36478611 tctttataagtcaatctcaaattagtttataactttatcaatatttcaaattagttattaactttgtcaaacgtttc 36478535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 444
Target Start/End: Complemental strand, 3248532 - 3248445
Alignment:
Q  357 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaa 444  Q
    |||||||| ||||| ||||||| |||   ||||| |||||||||| | ||| ||||||||| | ||| ||||| ||||||||||||||    
T  3248532 caccaaattggtccctgtctttataatcaactcttaaattagtctttgactatattaatatgtcaaaatagtctctgtctttgtcaaa 3248445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 451
Target Start/End: Complemental strand, 35661058 - 35660967
Alignment:
Q  360 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||| | ||||||||||| | |||||||| |||   | | ||||||||||| ||||||||   ||||||||| ||||||||||    
T  35661058 caaatcggtccatatttttgtaagtcattatcaaattactcttcgattctattaatatttcaaattagttcttgtctttgttaaaagtttct 35660967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 16810449 - 16810495
Alignment:
Q  373 gtctttgtaagtcactctcaaattagtctctaactttattaatattt 419  Q
    |||||||||||||||||||||||||||| |  ||| |||||||||||    
T  16810449 gtctttgtaagtcactctcaaattagtccccgactatattaatattt 16810495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 451
Target Start/End: Complemental strand, 6086 - 6026
Alignment:
Q  391 caaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||| | ||||| ||||||||| |||||||||  ||||||| ||||| ||||||    
T  6086 caaattagtctttgactttgttaatatttcaaattagtctttgtctttatcaaacgtttct 6026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 39392592 - 39392564
Alignment:
Q  387 ctctcaaattagtctctaactttattaat 415  Q
    |||||||||||||||||||||||||||||    
T  39392592 ctctcaaattagtctctaactttattaat 39392564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 519
Target Start/End: Original strand, 6219625 - 6219772
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatg 471  Q
    ||||||| ||||||| ||| ||| |||||| | | ||||||||||||||||||||||||||||||||||||||| ||||| ||  || | ||||   |||    
T  6219625 tgtctttataagtcattcttaaactagtctatgattttattaatattttaaattagtcactgtctttgtcaaaaatttctcaattaggtccctcattatg 6219724  T
Q  472 tgacaaaaacataaatacaaggacctaattaacaaacttttaacaaag 519  Q
    ||||||||||||||| ||   ||||||||| | | |||||| ||||||    
T  6219725 tgacaaaaacataaagacggtgacctaattgagatacttttgacaaag 6219772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 38783894 - 38783971
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||| |||||||||||  | ||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  38783894 tctttgtaagtcactttcaaattagtccatgactctattaatattttaaaatagtcattgtctttgtcaaaagtttct 38783971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 451
Target Start/End: Complemental strand, 10595591 - 10595501
Alignment:
Q  361 aaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||| |||| ||||||||||||| || | |||||||| ||  ||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  10595591 aaattggtctatgtctttgtaagacattgtcaaattaatccataactctattaatatttcaaattagtcattgtctttgtcaaaagtttct 10595501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 451
Target Start/End: Complemental strand, 10377643 - 10377546
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||| | ||||| ||||||||||||||| | |||||||||||| | ||| ||||||||||| |||||||||  ||| | |||||||| |||||    
T  10377643 aaccaccaagttggtccctgtctttgtaagtcattatcaaattagtctttgactctattaatatttcaaattagtccatgtttgtgtcaaaattttct 10377546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 445
Target Start/End: Original strand, 28504711 - 28504784
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    ||||||||||||||| |||||||||||||| | ||| ||||||||||| ||| ||||| |||| ||||||||||    
T  28504711 tgtctttgtaagtcattctcaaattagtctatgactctattaatatttcaaactagtctctgtttttgtcaaaa 28504784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 419
Target Start/End: Original strand, 8792967 - 8793014
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattt 419  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  8792967 tgtctttgtaagtcactctcaaattagtctccaactctattaatattt 8793014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 448
Target Start/End: Complemental strand, 46410920 - 46410826
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtt 448  Q
    ||||||||||| ||||  ||||||||||||| | |||||| ||||||| | ||| || |||||||| ||| ||||| |||||||| |||||||||    
T  46410920 aaccaccaaattggtcattgtctttgtaagtgattctcaatttagtctatgactctaataatatttcaaaatagtctctgtctttatcaaaagtt 46410826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 451
Target Start/End: Original strand, 27293283 - 27293359
Alignment:
Q  375 ctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||| ||| |||||||||||||||| ||| ||||||||||| ||||||||   | |||||| |||||||||||    
T  27293283 ctttgtaaatcattctcaaattagtctctgactctattaatatttcaaattagttcttatctttgccaaaagtttct 27293359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 429
Target Start/End: Complemental strand, 6219831 - 6219772
Alignment:
Q  370 catgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 429  Q
    |||||||||||||| || ||||||||  |||||||||| ||||||||||||||| |||||    
T  6219831 catgtctttgtaagccattctcaaatctgtctctaactctattaatattttaaactagtc 6219772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 449
Target Start/End: Complemental strand, 34835815 - 34835720
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||| ||||| ||||| | | ||||||||| | | | |||||||| ||||||| ||||||||||||||||||||| || || ||| |||||||||    
T  34835815 aaccatcaaattggtccctatttttgtaagttatttttaaattagtttctaactctattaatattttaaattagtccctatcattgccaaaagttt 34835720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 451
Target Start/End: Original strand, 34835593 - 34835667
Alignment:
Q  377 ttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||| ||  ||||||||   ||||||||| ||||||| ||| ||||| |||||||||||||||||||||    
T  34835593 ttgtaagtcattcctaaattagttcttaactttatcaatatttcaaactagtctctgtctttgtcaaaagtttct 34835667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 7790300 - 7790357
Alignment:
Q  392 aaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||||| ||| |||||||||||||||||||||| |   ||||||||||||||||||    
T  7790300 aaattagtttctgactttattaatattttaaattaatttttgtctttgtcaaaagttt 7790357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 15395209 - 15395266
Alignment:
Q  388 tctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    |||||||||||||| | ||| ||||||||||||||| ||||| |||||||||| ||||    
T  15395209 tctcaaattagtctatgactctattaatattttaaaatagtctctgtctttgttaaaa 15395266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 27562671 - 27562748
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||| |||| |||| |||||| |  ||||| ||||||||||| |||||| |  |||||||||||||||||||||    
T  27562671 tctttgtatgtcattctcgaattagaccataactctattaatatttcaaattaatttctgtctttgtcaaaagtttct 27562748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 454
Target Start/End: Complemental strand, 50147302 - 50147230
Alignment:
Q  382 agtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaa 454  Q
    ||||||| |||||||| |||  |||||||||||||||||||| |||||  | | |||||||||||||| ||||    
T  50147302 agtcactttcaaattaatcttcaactttattaatattttaaactagtctatatttttgtcaaaagtttttgaa 50147230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 451
Target Start/End: Original strand, 23399510 - 23399607
Alignment:
Q  357 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaata---ttttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||| | ||| ||||||||| ||||| | | |||||||||||  ||||| ||||||||   ||| |||||||||| ||| ||||||||||||||||    
T  23399510 caccaatttggtgcatgtctttctaagttaatatcaaattagtccttaactctattaatactatttcaaattagtcattgtttttgtcaaaagtttct 23399607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 437
Target Start/End: Complemental strand, 27293489 - 27293426
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctt 437  Q
    ||||||||||||| ||| |||||||||| | ||||||||||||||| ||| ||| | |||||||    
T  27293489 tctttgtaagtcattcttaaattagtctatgactttattaatatttcaaactagcccctgtctt 27293426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 6061613 - 6061659
Alignment:
Q  373 gtctttgtaagtcactctcaaattagtctctaactttattaatattt 419  Q
    |||||||||||| | |||||||||||||  |||||||||||||||||    
T  6061613 gtctttgtaagtgattctcaaattagtccttaactttattaatattt 6061659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 449
Target Start/End: Complemental strand, 15395473 - 15395431
Alignment:
Q  407 tttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||    
T  15395473 tttattaatattttaaaatagttactgtttttgtcaaaagttt 15395431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 419
Target Start/End: Complemental strand, 40650104 - 40650043
Alignment:
Q  357 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattt 419  Q
    |||||| | ||||||||||||||||||| | ||||||||||||| ||||||  ||||||||||    
T  40650104 caccaatttggtccatgtctttgtaagtgattctcaaattagtc-ctaactccattaatattt 40650043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 844627 - 844676
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctct 403  Q
    ||||||||| |  ||| |||||||||||||||||||||||||||| ||||    
T  844627 aaccaccaatttcgtctatgtctttgtaagtcactctcaaattagactct 844676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 451
Target Start/End: Original strand, 4066923 - 4066984
Alignment:
Q  390 tcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||| ||| || ||| |||||||| || ||| | |||||||||||||||||||||||||    
T  4066923 tcaaattggtccctgactctattaataattcaaaatggtcactgtctttgtcaaaagtttct 4066984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 7790483 - 7790411
Alignment:
Q  378 tgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||| |||||||||||| | | ||| ||||||||||| ||||||||  || ||||| ||||||||||||    
T  7790483 tgtaagtcattctcaaattagt-tatgactctattaatatttcaaattagtttctatctttatcaaaagtttct 7790411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 446
Target Start/End: Original strand, 38576563 - 38576648
Alignment:
Q  361 aaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaag 446  Q
    |||| ||||| | ||||||||| ||| |||||||||||||| | | | ||||||||||| |||  |||| |||||||| |||||||    
T  38576563 aaattggtccttatctttgtaaatcattctcaaattagtctttgattctattaatatttcaaaccagtctctgtctttatcaaaag 38576648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 46410638 - 46410722
Alignment:
Q  366 ggtccatgtctttgtaagtcact-ctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||||||||||| | | || |||||||||  | | | ||||||||||| ||| ||||| | |||||||||||||||||    
T  46410638 ggtccatgtctttgtaagtgatttcttaaattagtccatgaatatattaatatttcaaaatagtctcagtctttgtcaaaagttt 46410722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 435
Target Start/End: Original strand, 9530547 - 9530610
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtc 435  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  9530547 tgtctttgtaagtcattctcaaattagtctctaactttattaatatttcaaactagtctctgtc 9530610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 372 - 451
Target Start/End: Original strand, 19121854 - 19121933
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||  || ||||||||||||| ||||    
T  19121854 tgtctttgtaagccactctcaaactagtcgctaactctattaatattttaaactagtttctatctttgtcaaaagcttct 19121933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 451
Target Start/End: Complemental strand, 3960949 - 3960852
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||   |||| ||||||||||||| | | ||||| |||||| | ||| |||||||||||||||||||||  ||| ||||||||||||||||    
T  3960949 aaccaccaaagttgtccttgtctttgtaagttattatcaaactagtctatgactctattaatattttaaattagtccttgtgtttgtcaaaagtttct 3960852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 21394236 - 21394311
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 429  Q
    |||||||||||  |||  |||||||||||| ||||||||||||||||  ||||| ||||||||||||||| |||||    
T  21394236 aaccaccaaattagtcactgtctttgtaagccactctcaaattagtcattaactctattaatattttaaaatagtc 21394311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 513
Target Start/End: Complemental strand, 3890113 - 3889971
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtc-tctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacat 470  Q
    |||||||||  |||||||| ||  ||||| || |||| |||||||||| |||| ||||   |||||||||||||||||||| ||  || | |||||   |    
T  3890113 tgtctttgttcgtcactctaaacctagtcctccaactctattaatattctaaactagttcatgtctttgtcaaaagtttctcaattaggtccctcgttgt 3890014  T
Q  471 gtgacaaaaacataaatacaaggacctaattaacaaactttta 513  Q
    ||||||||||||| || |||||||||||||| | |||||||||    
T  3890013 gtgacaaaaacatgaagacaaggacctaattgagaaactttta 3889971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 30747944 - 30747996
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaat 424  Q
    ||||||| |||||||||||||||||| ||||||||| |||| |||||||||||    
T  30747944 tgtctttctaagtcactctcaaattaatctctaactctattgatattttaaat 30747996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 483
Target Start/End: Original strand, 3960721 - 3960832
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatg 471  Q
    |||||||||||||||   |||| |||||||| |||| |||||| |||| |||| ||| | |||||||||||||| |||||  |  |||| ||||  ||||    
T  3960721 tgtctttgtaagtcatcatcaacttagtctccaactctattaacatttcaaatcagttattgtctttgtcaaaactttctccattagatccctcatcatg 3960820  T
Q  472 tgacaaaaacat 483  Q
    ||||||||||||    
T  3960821 tgacaaaaacat 3960832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 374 - 451
Target Start/End: Complemental strand, 19122062 - 19121985
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||| |||||||||||| | ||| ||||||||||| ||| ||||   ||||||||| | ||||||||    
T  19122062 tctttgtaagtcactttcaaattagtctatgactctattaatatttcaaactagtttatgtctttgttagaagtttct 19121985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 21394568 - 21394490
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||  ||| ||  | || |||||||||| |||||||    
T  21394568 tgtctttgtaagtcactctcaaattagtc-ccgactttattaatattgaaaaataacctctatctttgtcaatagtttct 21394490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 451
Target Start/End: Complemental strand, 5656620 - 5656578
Alignment:
Q  409 tattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||    
T  5656620 tattaatattttaaactagtctctgtctttgttaaaagtttct 5656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 21969351 - 21969302
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaa 423  Q
    ||||||||||| | |||||||||||||||| |||  ||||||||||||||    
T  21969351 tctttgtaagtgaatctcaaattagtctctgactcaattaatattttaaa 21969302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 24794227 - 24794190
Alignment:
Q  392 aaattagtctctaactttattaatattttaaattagtc 429  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  24794227 aaattagtctctaactttattaatgtttcaaattagtc 24794190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Original strand, 26330227 - 26330264
Alignment:
Q  414 atattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  26330227 atattttaaaatagtcaatgtctttgtcaaaagtttct 26330264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 6782944 - 6782912
Alignment:
Q  390 tcaaattagtctctaactttattaatattttaa 422  Q
    ||||||||||| |||||||||||||||||||||    
T  6782944 tcaaattagtccctaactttattaatattttaa 6782912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 451
Target Start/End: Original strand, 39840659 - 39840738
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||| | |||||||||||||||| ||| ||||||||||| ||| |||||| ||| ||||||||||||||||    
T  39840659 tgtctttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtcattgtttttgtcaaaagtttct 39840738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 354 - 451
Target Start/End: Complemental strand, 55447279 - 55447182
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||| |||| ||||  ||||||||||||| | |||||||| ||||||| ||| | ||||||||||||| ||||| |||||||| ||||||||||||    
T  55447279 aaccactaaattggtctttgtctttgtaagtgattctcaaatcagtctctgactctcttaatattttaaaatagtctctgtctttctcaaaagtttct 55447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 444
Target Start/End: Original strand, 16298174 - 16298264
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaa 444  Q
    |||||||||||| |||  ||||||||||||||||||||||| |||||    ||||||||||||||||||| || || |||| |||||||||    
T  16298174 aaccaccaaatcagtcactgtctttgtaagtcactctcaaactagtccacgactttattaatattttaaaataatctctgtgtttgtcaaa 16298264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 445
Target Start/End: Complemental strand, 33075349 - 33075275
Alignment:
Q  371 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    |||||||| |||||||||||||||||| ||  ||| | |||||||||||||||||||||| ||| ||||||||||    
T  33075349 atgtctttataagtcactctcaaattaatcattaaatctattaatattttaaattagtcattgtttttgtcaaaa 33075275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 451
Target Start/End: Complemental strand, 45965895 - 45965804
Alignment:
Q  360 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||| ||||| ||| |||||||||||||||||||||||| | | ||| ||||||||||| ||| |||| | | ||||| ||||||||||||    
T  45965895 caaattggtccctgtatttgtaagtcactctcaaattagtttgtgactctattaatatttcaaactagttattatctttttcaaaagtttct 45965804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 451
Target Start/End: Original strand, 40472831 - 40472909
Alignment:
Q  373 gtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||||| |||||||||||||||| | ||| |||||| |||||||| ||||   | ||||||||||||||||||    
T  40472831 gtctttgtaagttactctcaaattagtctttgactctattaaaattttaaactagtttatttctttgtcaaaagtttct 40472909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 20124322 - 20124246
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||||||| | |||||||||||||| ||| ||| ||||||| ||| |||||| ||| ||||||||||||||    
T  20124322 tgtctttgtaagtcatt-tcaaattagtctctgactctatcaatatttcaaaatagtcattgtttttgtcaaaagttt 20124246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 519
Target Start/End: Complemental strand, 29504997 - 29504832
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctga 453  Q
    ||||| |||||  |||||| || ||||||  ||||||||||||||||   |||| ||||||||||||||| ||||   | ||||||| ||||||||||      
T  29504997 aaccatcaaatttgtccatatcattgtaaaccactctcaaattagtcctcaactctattaatattttaaactagtttttatctttgttaaaagtttctcg 29504898  T
Q  454 accagattcctcgacatgtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaag 519  Q
    |   | | ||||| |||||||||||| |||||| |||  ||||||||| | |||||||||| ||||    
T  29504897 atttggtccctcgtcatgtgacaaaagcataaagacattgacctaattgaaaaacttttaataaag 29504832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 451
Target Start/End: Complemental strand, 39840969 - 39840892
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||| | ||||||||||||  |||||||||||||||||| ||| ||||| || ||||||| |||| |||||    
T  39840969 tctttgtaagtgattctcaaattagttcctaactttattaatatttcaaaatagtccctatctttgttaaaattttct 39840892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 449
Target Start/End: Complemental strand, 33429196 - 33429121
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||||||| |||||||||||   |||| ||||||||||||||| || ||| | ||||| ||||||||||    
T  33429196 tctttgtaagtcactttcaaattagtcatcaactctattaatattttaaaataatcaatatctttatcaaaagttt 33429121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 1431542 - 1431476
Alignment:
Q  378 tgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaa 444  Q
    ||||| |||||||||||||||||   || | ||||||||| | ||||||||||||||||||||||||    
T  1431542 tgtaattcactctcaaattagtcctcaattctattaatatctcaaattagtcactgtctttgtcaaa 1431476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 27812204 - 27812261
Alignment:
Q  371 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagt 428  Q
    |||||||||||||||| ||| |||||||||||| | | ||||||||||| ||||||||    
T  27812204 atgtctttgtaagtcattcttaaattagtctctgagtctattaatatttcaaattagt 27812261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 42045771 - 42045848
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||||| |  ||||||||| ||  ||||| ||||||||||| ||| |||||| ||||| ||||||||||||    
T  42045771 tgtctttgtaagtgatcctcaaattaatccataactctattaatatttcaaaatagtcattgtctatgtcaaaagttt 42045848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 449
Target Start/End: Original strand, 29504774 - 29504846
Alignment:
Q  377 ttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||| ||| |||||||||||||  ||||| || |||||||||||| |||||| ||||||| | ||||||||    
T  29504774 ttgtaattcattctcaaattagtccataactctaataatattttaaactagtcattgtctttattaaaagttt 29504846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 40861029 - 40860973
Alignment:
Q  373 gtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 429  Q
    |||||||||||||| ||| || ||||||||| | ||||||||||||| |||||||||    
T  40861029 gtctttgtaagtcattcttaatttagtctctgattttattaatatttcaaattagtc 40860973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 449
Target Start/End: Complemental strand, 41709355 - 41709291
Alignment:
Q  385 cactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||||||||||||| | ||||||||||||||||||||| |||   | ||||||| ||||||||    
T  41709355 cactctcaaattagtccccaactttattaatattttaaataagtttatatctttgttaaaagttt 41709291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 445
Target Start/End: Complemental strand, 31300442 - 31300371
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    ||||||||||  | |||||||||||||| ||||| |||| ||||||||||||| |   ||||||||||||||    
T  31300442 tctttgtaagagattctcaaattagtctataactctatttatattttaaattaatttttgtctttgtcaaaa 31300371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 428
Target Start/End: Original strand, 3910245 - 3910287
Alignment:
Q  386 actctcaaattagtctctaactttattaatattttaaattagt 428  Q
    ||||||||||||||| |||||| ||||||||||||||| ||||    
T  3910245 actctcaaattagtccctaactctattaatattttaaactagt 3910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 45965672 - 45965746
Alignment:
Q  371 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    ||||||||||||||| ||||||||||| ||||| | | ||||||||||| ||  |||||  ||||||||| ||||    
T  45965672 atgtctttgtaagtcgctctcaaattaatctctgattctattaatatttcaatatagtccttgtctttgttaaaa 45965746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 17094 - 17179
Alignment:
Q  366 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||| ||||||||||||  ||||||||||||||| | |||| ||||||||||||||| ||||  |||||||||||||| ||||||    
T  17094 ggtccctgtctttgtaagatactctcaaattagtcccaaactctattaatattttaaactagttcctgtctttgtcaaacgtttct 17179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 518
Target Start/End: Original strand, 33229497 - 33229635
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtg 473  Q
    |||||||||||| |||||||||||||| | |||  ||||||||||| ||| |||||      |||||||||||||||| ||  || | ||||| ||||||    
T  33229497 tctttgtaagtcgctctcaaattagtccccaaccctattaatatttcaaactagtc------tttgtcaaaagtttctcaattaggtccctcgtcatgtg 33229590  T
Q  474 acaaaaacataaatacaaggacctaattaacaaacttttaacaaa 518  Q
    ||||||||||||| ||| ||| |||||| | |||||||| |||||    
T  33229591 acaaaaacataaagacagggatctaattgagaaacttttgacaaa 33229635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 449
Target Start/End: Complemental strand, 10028970 - 10028876
Alignment:
Q  355 accaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||  |||  |||||||||| ||||||||||||||||||| | ||||||||||||||| ||| |||||  ||||||| ||||| ||||    
T  10028970 accaccaaattagtctttgtctttgtaggtcactctcaaattagtctttgactttattaatatttcaaactagtcgttgtctttttcaaaggttt 10028876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 451
Target Start/End: Original strand, 10028633 - 10028730
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||| | || |||| ||||||||||| ||||||||||||| || ||| ||||||||||| |||||||||  | || ||| |||||||||||    
T  10028633 aaccaccaaattgatcaatgtatttgtaagtcattctcaaattagtcactgactctattaatatttcaaattagtctttatccttgccaaaagtttct 10028730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 10028737 - 10028822
Alignment:
Q  366 ggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||| ||||||||||| ||||||||||||| |  ||| ||||||||||| |||| |||| || |||||| |||||||||||    
T  10028737 ggtccatgtatttgtaagtcattctcaaattagtcaccgactctattaatatttcaaatcagtctctatctttgccaaaagtttct 10028822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 5840352 - 5840410
Alignment:
Q  371 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 429  Q
    |||||||||||||| |||||||||||||||||| | | ||||||||||||||| |||||    
T  5840352 atgtctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 5840410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 451
Target Start/End: Original strand, 29490376 - 29490451
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||| |||||||||||| | | | ||||||||||||||| ||||   ||||||||| ||||||||||    
T  29490376 tttgtaagtcactatcaaattagtctatgattatattaatattttaaaatagtttttgtctttgtaaaaagtttct 29490451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 23768775 - 23768825
Alignment:
Q  388 tctcaaattagtctctaactttattaatattttaaattagtcactgtcttt 438  Q
    |||||||||||||| ||| ||||||||||||||||| ||||| ||||||||    
T  23768775 tctcaaattagtctataattttattaatattttaaaatagtctctgtcttt 23768825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 451
Target Start/End: Complemental strand, 33229666 - 33229620
Alignment:
Q  405 actttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||    
T  33229666 actttattaatattttaaattagtctctctgtttgtcaaaagtttct 33229620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 449
Target Start/End: Original strand, 21136587 - 21136664
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||||  |||||| |||||||||||||| | ||| ||||||||||| ||| |||||  | ||||||||||||||||    
T  21136587 tgtcttttaaagtcattctcaaattagtctttgactctattaatatttcaaaatagtccttatctttgtcaaaagttt 21136664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 519
Target Start/End: Complemental strand, 21136793 - 21136650
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacatgtgac 475  Q
    ||||||||| | ||| |||||||||| |  || ||||||||||| ||| |||||||| ||||||||||||  |||| ||  || ||  ||| || |||||    
T  21136793 tttgtaagtaattcttaaattagtctttgtctctattaatatttcaaaatagtcactatctttgtcaaaaaattctcaattaggtttttcgtcaagtgac 21136694  T
Q  476 aaaaacataaatacaaggacctaattaacaaacttttaacaaag 519  Q
    ||||  ||||| | | |||||||||| | |||||||| ||||||    
T  21136693 aaaagtataaagaaagggacctaattgaaaaacttttgacaaag 21136650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 29490665 - 29490606
Alignment:
Q  392 aaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||||| ||||||||||||||||||| || ||  | |||| |||||||||||||    
T  29490665 aaattagtctctgactttattaatattttaaaataatctttatcttcgtcaaaagtttct 29490606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 41424410 - 41424464
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagt 428  Q
    ||||||||||| | | |||||| ||||||| ||| ||||||||||||||||||||    
T  41424410 tctttgtaagtaattttcaaatcagtctctgactctattaatattttaaattagt 41424464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 454
Target Start/End: Complemental strand, 5841042 - 5840961
Alignment:
Q  373 gtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaa 454  Q
    ||||||||| |||||| ||||| |||| | | ||| |||||||||||||| |||||  || ||||| |||||||| ||||||    
T  5841042 gtctttgtatgtcactttcaaaatagtttttgactctattaatattttaatttagtttctatctttatcaaaagtgtctgaa 5840961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 32029700 - 32029639
Alignment:
Q  390 tcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||||||||||| ||| |||| |||||||||| ||||   |||||||||||||| |||||    
T  32029700 tcaaattagtctctgactctatttatattttaaaatagttcatgtctttgtcaaaaatttct 32029639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 23961724 - 23961644
Alignment:
Q  370 catgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttc 450  Q
    ||||||||||||||||| | |||||| ||||||| | |  |||||||||| ||| ||||| ||  |||| |||||||||||    
T  23961724 catgtctttgtaagtcattttcaaatcagtctctgattcaattaatatttcaaaatagtccctaactttatcaaaagtttc 23961644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 354 - 451
Target Start/End: Original strand, 17658758 - 17658855
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||| |||| | ||||||| ||| ||||||||| ||||||||||| | |||| ||||||||||| ||| |||||| |||||||||||||| |||||    
T  17658758 aaccactaaattgatccatgtatttttaagtcactatcaaattagtccccaactctattaatatttcaaaatagtcattgtctttgtcaaaaatttct 17658855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 371 - 518
Target Start/End: Original strand, 6511016 - 6511163
Alignment:
Q  371 atgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttctgaaccagattcctcgacat 470  Q
    |||||||| ||||||| | |||||||||||| | | | | ||||||||| ||| ||||| |  |||||||||||| ||||| ||  |||||| ||  |||    
T  6511016 atgtctttataagtcattttcaaattagtctatgattctgttaatatttcaaaatagtctccatctttgtcaaaaatttctcaaatagattcttcatcat 6511115  T
Q  471 gtgacaaaaacataaatacaaggacctaattaacaaacttttaacaaa 518  Q
    |||||||||||||||| ||| ||||| |||| | |||||||| |||||    
T  6511116 gtgacaaaaacataaagacatggaccaaattgagaaacttttgacaaa 6511163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 380 - 451
Target Start/End: Original strand, 22191390 - 22191461
Alignment:
Q  380 taagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||| | |||||||||||| |||||| |||||||||||||| |||||  ||||||||||||||||||||    
T  22191390 taagtcattttcaaattagtctataacttaattaatattttaaaatagtctttgtctttgtcaaaagtttct 22191461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 438
Target Start/End: Complemental strand, 22191611 - 22191527
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtcttt 438  Q
    ||||||||| | | ||| || |||||||||||||||||||||||||| || ||| ||||||||||||||| |||||  |||||||    
T  22191611 aaccaccaatttgatccttgcctttgtaagtcactctcaaattagtccctgactctattaatattttaaaatagtctatgtcttt 22191527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 445
Target Start/End: Complemental strand, 32014075 - 32013984
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    ||||||||| | ||||  ||| ||||||||| | |||||||||||||| | ||| |||| |||||| ||| |||||||||||||||||||||    
T  32014075 aaccaccaatttggtcgctgtatttgtaagtgattctcaaattagtctatgactctattgatatttcaaaatagtcactgtctttgtcaaaa 32013984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 32503121 - 32503046
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||| | |||||||||||||  ||| |||| |||||||||| |||||| ||||||||||||||| ||||    
T  32503121 tttgtaagtcattatcaaattagtctcacactctattgatattttaaaatagtcattgtctttgtcaaaagattct 32503046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 451
Target Start/End: Complemental strand, 33940112 - 33940037
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||| | |||||||||||||  | ||||||||||||||| ||| |||||||||| ||| ||||||||||||    
T  33940112 tttgtaagtgattctcaaattagtcgttgactttattaatatttcaaaatagtcactgtttttttcaaaagtttct 33940037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 17672926 - 17673001
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 429  Q
    |||||| |||| | ||||||| ||| ||||||||||||||||||||||| || | ||||||||||| ||| |||||    
T  17672926 aaccactaaattgatccatgtatttttaagtcactctcaaattagtctccaattctattaatatttcaaaatagtc 17673001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 417
Target Start/End: Original strand, 35736709 - 35736772
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatat 417  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||| || ||||||    
T  35736709 aaccaccaaattggtccatgtctttgtaattcactctcaaactagtcactgactctactaatat 35736772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 18561610 - 18561656
Alignment:
Q  370 catgtctttgtaagtcactctcaaattagtctctaactttattaata 416  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||    
T  18561610 catgtctttgtaagtcattctcaaattagtcttcaactttattaata 18561656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 2451218 - 2451166
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagt 428  Q
    ||||||||||| |||||||||||||| ||||| |||||| ||| |||||||||    
T  2451218 tttgtaagtcattctcaaattagtctttaactctattaacattataaattagt 2451166  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 451
Target Start/End: Complemental strand, 6511225 - 6511148
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||| | | |||||||||||  | |||  |||||||||||||||||  |||| ||||||||||||||||    
T  6511225 tgtctttgtaagtcatttttaaattagtctcagatttt--taatattttaaattagtttctgtgtttgtcaaaagtttct 6511148  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 17627854 - 17627929
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 429  Q
    |||||| |||| | ||||||| ||| ||||||||| ||||||||||| | |||| ||||||||||| ||| |||||    
T  17627854 aaccactaaattgatccatgtatttttaagtcactttcaaattagtcaccaactctattaatatttcaaaatagtc 17627929  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 41440020 - 41440071
Alignment:
Q  377 ttgtaagtcactctcaaattagtctctaactttattaatattttaaattagt 428  Q
    |||||||||| | | |||||||||| |||||||||||||||||| |||||||    
T  41440020 ttgtaagtcatttttaaattagtctataactttattaatattttgaattagt 41440071  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 8033935 - 8033878
Alignment:
Q  394 attagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||||| ||| ||||||||||||||||||| | ||   ||||||||||||||||||||    
T  8033935 attagtttctgactttattaatattttaaaatggtttatgtctttgtcaaaagtttct 8033878  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 451
Target Start/End: Complemental strand, 8257658 - 8257561
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||| ||||| | ||||||||| ||||| ||| | | |||||||||| | ||| ||||| |||||||||||| ||  | ||||||| ||||||||||    
T  8257658 aaccatcaaattgatccatgtctatgtaactcatttttaaattagtctttgactctattattattttaaattaatctttttctttgttaaaagtttct 8257561  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 17184764 - 17184833
Alignment:
Q  360 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtc 429  Q
    ||||| ||| ||||||||||||||  | | ||||| |||||||| ||| ||||||||||||||| |||||    
T  17184764 caaattggttcatgtctttgtaagctattatcaaactagtctctgactctattaatattttaaactagtc 17184833  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 451
Target Start/End: Original strand, 32502807 - 32502891
Alignment:
Q  367 gtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||| ||| ||||||||||| ||||||||||||  || ||||||||| ||||| ||| ||||   ||||||||| ||| ||||||    
T  32502807 gtccttgtttttgtaagtcattctcaaattagttcctcactttattagtatttcaaaatagttcatgtctttgttaaatgtttct 32502891  T

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Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 445
Target Start/End: Complemental strand, 122635 - 122547
Alignment:
Q  357 caccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaa 445  Q
    |||||| | ||||| ||||||||||||  | |||||||||||||||| ||| ||||||||||| ||| |||||  ||||||||||||||    
T  122635 caccaagttggtccctgtctttgtaagaaattctcaaattagtctctgactctattaatatttcaaactagtctttgtctttgtcaaaa 122547  T

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Target: scaffold0022; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 451
Target Start/End: Original strand, 62678 - 62768
Alignment:
Q  361 aaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    |||| |||| |||||||||||||  | |||||||||||||    ||| |||| |||||||||||||||   | ||||||||||||||||||    
T  62678 aaattggtctatgtctttgtaagagattctcaaattagtcaacgactctattgatattttaaattagttcttatctttgtcaaaagtttct 62768  T

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Target: scaffold0198 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 11973 - 11907
Alignment:
Q  354 aaccaccaaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatatttt 420  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||  | |||  |||||||||||    
T  11973 aaccatcaaattgatccatgtctttgtaagtcactctcaaattagtccatgactcaattaatatttt 11907  T

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Target: scaffold0198; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 11594 - 11542
Alignment:
Q  368 tccatgtctttgtaagtcactctcaaattagtctctaactttattaatatttt 420  Q
    |||||||||||||||||||||||||||||||||  | |||  |||||||||||    
T  11594 tccatgtctttgtaagtcactctcaaattagtccatgactcaattaatatttt 11542  T

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Target: scaffold0528 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 449
Target Start/End: Original strand, 1649 - 1737
Alignment:
Q  360 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    ||||||||||| ||||||||||||| | ||||||||||| | |  ||| || |||||||||||| ||||| |||  ||||||||||||||    
T  1649 caaatcggtcc-tgtctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtctctgcttttgtcaaaagttt 1737  T

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Target: scaffold0252 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 451
Target Start/End: Original strand, 19789 - 19837
Alignment:
Q  403 taactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||||||||||||||| |||||  ||| ||||||||||||||||    
T  19789 taactttattaatattttaaactagtctttgtgtttgtcaaaagtttct 19837  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 451
Target Start/End: Complemental strand, 6311 - 6220
Alignment:
Q  360 caaatcggtccatgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||| ||||| ||| ||||||||| | |||||||||||||| | ||| ||||||||||| ||| ||||   || |||||| ||||||||||    
T  6311 caaattggtccctgtttttgtaagttattctcaaattagtctttgactctattaatatttcaaaatagtttttgcctttgttaaaagtttct 6220  T

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Target: scaffold0066 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 451
Target Start/End: Original strand, 11992 - 12067
Alignment:
Q  376 tttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||||||| ||||||||||| || | ||| ||||||||||||||||| ||||   || |||| ||||||||||||    
T  11992 tttgtaagttactctcaaatttgtttttaattttattaatattttaaaatagtttttgcctttatcaaaagtttct 12067  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 10875 - 10952
Alignment:
Q  374 tctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagtttct 451  Q
    ||||| ||||| | |||| ||||||||| | | ||||||||||||||||| ||||   | ||||||||||||||||||    
T  10875 tctttttaagtgattctctaattagtctatgattttattaatattttaaaatagtttatatctttgtcaaaagtttct 10952  T

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Target: scaffold0340; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 11083 - 11006
Alignment:
Q  372 tgtctttgtaagtcactctcaaattagtctctaactttattaatattttaaattagtcactgtctttgtcaaaagttt 449  Q
    |||||| |||||| | |||||||||||||  | | ||||||||||| ||||| |||||  ||||||| ||||||||||    
T  11083 tgtcttggtaagtgattctcaaattagtccatgaatttattaatatcttaaaatagtctttgtctttatcaaaagttt 11006  T

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