View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13302_low_4 (Length: 453)
Name: NF13302_low_4
Description: NF13302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13302_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 48611441 - 48611342
Alignment:
| Q |
104 |
gatctttgtgtttaggggcaatgacacagctaacgagcttttaaccaaggcgtgtctatttctgctggttgaaaactattttcaaatcccttcttaagct |
203 |
Q |
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| T |
48611441 |
gatctttgtgtttgggggcaatgacacagctaacgagcttttaaccaaggcgtgtctattgctgctggttgaaaactattttcaaatcccttcttaagct |
48611342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 48611496 - 48611438
Alignment:
| Q |
4 |
taacttttgatagatttgtttatgttcagtgtcttgctagtgttctattaccaaagatc |
62 |
Q |
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| T |
48611496 |
taacttttgatagatttgtttatgttgagtgtattgctagtgttctattaccaaagatc |
48611438 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 40777738 - 40777657
Alignment:
| Q |
118 |
ggggcaatgacacagctaacgagcttttaaccaaggcgtgtctatttctgctggttgaaaactattttcaaatcccttcttaagc |
202 |
Q |
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| T |
40777738 |
ggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctatt---gctggttgaaaactatttccaaaccccctcttaagc |
40777657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 38168871 - 38168949
Alignment:
| Q |
118 |
ggggcaatgacacagctaacgagcttttaaccaaggcgtgtctatttctgctggttgaaaactattttcaaatcccttctta |
199 |
Q |
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| T |
38168871 |
ggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctat---tgctggttgaaaactatttccaaaccccctctta |
38168949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 40765162 - 40765084
Alignment:
| Q |
118 |
ggggcaatgacacagctaacgagcttttaaccaaggcgtgtctatttctgctggttgaaaactattttcaaatcccttctta |
199 |
Q |
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| T |
40765162 |
ggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctatt---gctggttgaaaactatttccaaaccccctctta |
40765084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 40771027 - 40770949
Alignment:
| Q |
118 |
ggggcaatgacacagctaacgagcttttaaccaaggcgtgtctatttctgctggttgaaaactattttcaaatcccttctta |
199 |
Q |
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| T |
40771027 |
ggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctatt---gctggttgaaaactatttccaaaccccctctta |
40770949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 6600957 - 6600879
Alignment:
| Q |
118 |
ggggcaatgacacagctaacgagcttttaaccaaggcgtgtctatttctgctggttgaaaactattttcaaatcccttctta |
199 |
Q |
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| T |
6600957 |
ggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctatt---gctggttgaaaactatttccaaaccccctctta |
6600879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 35970411 - 35970333
Alignment:
| Q |
118 |
ggggcaatgacacagctaacgagcttttaaccaaggcgtgtctatttctgctggttgaaaactattttcaaatcccttctta |
199 |
Q |
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| T |
35970411 |
ggggcaatgacgcagctaatgaggttataaccgaggcgcgtctatt---gctggttgaaaactatttccaaaccccctctta |
35970333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 9212475 - 9212398
Alignment:
| Q |
118 |
ggggcaatgacacagctaacgagcttttaaccaaggcgtgtctatttctgctggttgaaaactattttcaaatcccttctt |
198 |
Q |
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| T |
9212475 |
ggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctat---tgctggttgaaaactatttccaaaccccctctt |
9212398 |
T |
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