View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13302_low_5 (Length: 428)
Name: NF13302_low_5
Description: NF13302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13302_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 32935471 - 32935874
Alignment:
| Q |
16 |
ctttacatattcaggagtggagtacaaggctttttccccttcttctggctcaaactttgatgaatgcaaagagataattcttaaggttcttaaagtgaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32935471 |
ctttacatattcaggagtggagtacaaggctttttccccttcttctggctcaaactttaatgaatgcaaagagataattcttaaggttcttaaagtgaat |
32935570 |
T |
|
| Q |
116 |
gatccatgtccctattcgagttgcactttcagtggaatatggaatggtggaggagggagtggacaaaagaaactttttgttacttcagctttcgcttacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32935571 |
gatccatgtccctattcgagttgcactttcagtggaatatggaatggtggaggagggagtggacaaaagaaactttttgttacttcagctttcgcttacc |
32935670 |
T |
|
| Q |
216 |
taactgaagatgtaaaatactattgctttacatgatattgcggtgattatgttgttttaatgttattcttcatgcatttctaatggggaaannnnnnnnn |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32935671 |
taactgaagatgtaaaatactattgctttacatgatagtgcggtgattatgttgttttaatgttattcttcatgcatttctaat--ggaatttttttatt |
32935768 |
T |
|
| Q |
316 |
nnnnnaggttggtatggttgaaccaaataaacctaattccatacttcatccaatagatttcgaaattgaagctaaacgagcttgtgcattaaactttgat |
415 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32935769 |
tttttaggttggtatggttgagccaaataaacctaattccatacttcatccaatagatttcgaaattgaagctaaacgagcttgtgcattaaactttgag |
32935868 |
T |
|
| Q |
416 |
gatgtc |
421 |
Q |
| |
|
|||||| |
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|
| T |
32935869 |
gatgtc |
32935874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 32927216 - 32927436
Alignment:
| Q |
23 |
tattcaggagtggagtacaaggctttttccccttcttctggctcaaactttgatgaatgcaaagagataattcttaaggttcttaaagtgaatgatccat |
122 |
Q |
| |
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||||| |||||||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32927216 |
tattcgggagtggaatataaggtgtttcccccttcttctggctcaaactttgatgaatgcaaagagataactcttaaggttcttaaagtgaatgatccat |
32927315 |
T |
|
| Q |
123 |
gtccctattcgagttgcactttcagtggaatatggaatggtggaggagggagtggacaaaagaaa-ctttttgttacttcagctttcgcttacctaactg |
221 |
Q |
| |
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|||||||||||| ||||||||| |||| |||||||||||||||||||| || ||| |||| ||| ||||||||| |||| ||||| |||||| |||| | |
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| T |
32927316 |
gtccctattcgaattgcacttttggtgggatatggaatggtggaggaggaagcggaaaaaaaaaatctttttgtttcttcggcttttgcttacttaaccg |
32927415 |
T |
|
| Q |
222 |
aagatgtaaaatactattgct |
242 |
Q |
| |
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||||||||||| | ||||||| |
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| T |
32927416 |
aagatgtaaaacattattgct |
32927436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 32942956 - 32943114
Alignment:
| Q |
19 |
tacatattcaggagtggagtacaaggctttttccccttcttctggctcaaactttgatgaatgcaaagagataattcttaaggttcttaaagtgaatgat |
118 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32942956 |
tacatattcaggagaggagtataaggcattttctcctgcttctggctccaactttgatgaatgcaaagagataattcttaaggcacttaaagtgaatgat |
32943055 |
T |
|
| Q |
119 |
ccatgtccctattcgagttgcactttcagtggaatatggaatggtggaggagggagtgg |
177 |
Q |
| |
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|||||||| ||| || || | ||| |||| |||||||| ||||||||||| ||||| |
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|
| T |
32943056 |
ccatgtccttatgggaaatgtagttttggtgggatatggaacggtggaggaggaagtgg |
32943114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 32950137 - 32950244
Alignment:
| Q |
19 |
tacatattcaggagtggagtacaaggctttttccccttcttctggctcaaactttgatgaatgcaaagagataattcttaaggttcttaaagtgaatgat |
118 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
32950137 |
tacatattcaggagaggagtataaggcattttctcctgcttctggccccaactttgatgaatgcaaagagataattcttaaggcacttaaagtgaatgat |
32950236 |
T |
|
| Q |
119 |
ccatgtcc |
126 |
Q |
| |
|
|||||||| |
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|
| T |
32950237 |
ccatgtcc |
32950244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 421
Target Start/End: Original strand, 32927595 - 32927695
Alignment:
| Q |
321 |
aggttggtatggttgaaccaaataaacctaattccatacttcatccaatagatttcgaaattgaagctaaacgagcttgtgcattaaactttgatgatgt |
420 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||| ||||||||||||| ||||| |
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| T |
32927595 |
aggttggtatggatgagccaaataaacctaattccatacatcatccggtagatttcgaagttgaagctaagcgagcttgtacattaaactttgaggatgt |
32927694 |
T |
|
| Q |
421 |
c |
421 |
Q |
| |
|
| |
|
|
| T |
32927695 |
c |
32927695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 32924529 - 32924680
Alignment:
| Q |
78 |
aatgcaaagagataattcttaaggttcttaaagtgaatgatccatgtccctattcgagttgcactttcagtggaatatggaatggtggaggagggagtgg |
177 |
Q |
| |
|
|||||||| ||||| ||| | ||| ||||||| ||||| |||||||||||||| || ||||||||| ||||||| |||| |||||||||||| ||||| |
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| T |
32924529 |
aatgcaaaaagatagttcgtgaggctcttaaattgaattatccatgtccctatcagaattgcacttttggtggaatttggagtggtggaggaggaagtgg |
32924628 |
T |
|
| Q |
178 |
acaaaagaaactttttgttacttcagctttcgcttacctaactgaagatgta |
229 |
Q |
| |
|
||| | | |||||||| | ||||| ||||| ||||||| ||||||||||| |
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| T |
32924629 |
acagagaatactttttgctgcttcatctttcttttacctagctgaagatgta |
32924680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 32912557 - 32912707
Alignment:
| Q |
79 |
atgcaaagagataattcttaaggttcttaaagtgaatgatccatgtccctattcgagttgcactttcagtggaatatggaatggtggaggagggagtgga |
178 |
Q |
| |
|
||||||| ||||||||| ||||| |||||| |||| |||||||||||||| | ||||||||| ||||||| |||||||| ||||| || | |||| |
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| T |
32912557 |
atgcaaaaagataattcgtaaggcacttaaattgaactatccatgtccctatcaaaattgcacttttggtggaatttggaatggcggagggggaaatgga |
32912656 |
T |
|
| Q |
179 |
caaaagaaactttttgttacttcagctttcgcttacctaactgaagatgta |
229 |
Q |
| |
|
|| || | ||||||| | ||||| ||||| ||||||| ||||||||||| |
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|
| T |
32912657 |
cagaaacacctttttgcttcttcatctttcttttacctacctgaagatgta |
32912707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 11824870 - 11824986
Alignment:
| Q |
78 |
aatgcaaagagataattcttaaggttcttaaagtgaatgatccatgtccctattcgagttgcactttcagtggaatatggaatggtggaggagggagtgg |
177 |
Q |
| |
|
|||||||| ||||| ||| | ||| ||||||| ||||| |||||||||| ||| || ||||||||| ||||||| ||||||||||||||||| ||||| |
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|
| T |
11824870 |
aatgcaaaaagatagttcatcaggctcttaaattgaattatccatgtccttatcagaattgcacttttggtggaatttggaatggtggaggaggaagtgg |
11824969 |
T |
|
| Q |
178 |
acaaaagaaactttttg |
194 |
Q |
| |
|
||| | |||||||||| |
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|
| T |
11824970 |
acagagaaaactttttg |
11824986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 419
Target Start/End: Original strand, 11825091 - 11825189
Alignment:
| Q |
321 |
aggttggtatggttgaaccaaataaacctaattccatacttcatccaatagatttcgaaattgaagctaaacgagcttgtgcattaaactttgatgatg |
419 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| || | ||| || | |||||||| | ||||||||| ||||||||||||||| ||||| |||| |
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|
| T |
11825091 |
aggttggtatggttgatccaaataaacctaatttcaaaattcgacctgtggatttcgagagtgaagctaagaaagcttgtgcattaaattttgaggatg |
11825189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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