View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13302_low_8 (Length: 395)
Name: NF13302_low_8
Description: NF13302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13302_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 42667726 - 42668099
Alignment:
| Q |
19 |
accactagtagttagtaagccaattcgtaaggtgtaataaaatagattatata--gagttaaattgagtacccggtacacatttaactcaacatcaagat |
116 |
Q |
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| T |
42667726 |
accactagtagttagtaagccaattcgtaaggtgtaataaaatagattatatatagagttaaattgagtacccggtacacatttaactcaacatcaagat |
42667825 |
T |
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| Q |
117 |
ctctagtattaaaaaatacacgtccctatgagaataataag--aataataactaacatgcatttttatatgcacagtct-----ttaaatctcggacatc |
209 |
Q |
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| T |
42667826 |
ctttagtattaaaaaatacacgtccctatgaaaataataactcagttgtcaataacatgcatttttatatgcacagtctgaggtttgaatctcggacacc |
42667925 |
T |
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| Q |
210 |
ccacttatccacacaaagttgaattctagtcattagacggnnnnnnntacacatattcacatgtgttagctagttgatcttggaataatttatttcatta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42667926 |
ccacttatccacacaaagttgaattctagtcattagacagaaaaaaatacacatattcacatgtgttagctagttgatcttggaataatttatttcatta |
42668025 |
T |
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| Q |
310 |
gacttgatttaaattaaattaattattgtgtaacacatttgtgtggaatctaaatctatttaggtcatgatgat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42668026 |
gacttgatttaaattaaattaattattgtgtaacacatttgtgtggaatctaaatctatttaggtcatcatgat |
42668099 |
T |
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