View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13302_low_9 (Length: 370)
Name: NF13302_low_9
Description: NF13302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13302_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 354
Target Start/End: Original strand, 31762947 - 31763258
Alignment:
| Q |
37 |
tttgaacggataaaataataattttggagggtgcgtgagagggatggagggtgcgataagaaaatctccgaattctactatcattaaaatttgagataaa |
136 |
Q |
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| T |
31762947 |
tttgaacggataaaataataattttggagggtgcgtgagagggatggagggtggaataagaaaatctccgaattctactatcattaaaatttgagataaa |
31763046 |
T |
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| Q |
137 |
aagcccaatctattttttcnnnnnnnnnnnnnnccgctaccgctaccgcttcttacagcagaaacaagtttgaatgcactgaactcatttcgccggnnnn |
236 |
Q |
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| T |
31763047 |
aagcccaatctattttttcaaaaataaaaaaa------accgctaccgcttcttacagcagaaacaagtttgaatgcactgaactcatttcgccgggaaa |
31763140 |
T |
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| Q |
237 |
nnnnnnnnnnnnngctcgtcggaaaacgcatccggagttagtttccggcagccagaaacagtgagaaattccaggtttcgctttcttctttttccgatta |
336 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31763141 |
aaaaaaaaaaaaagctcgtcggaaaacgcagccggagttagtttccggcagccagaaacagtgagaaattccaggtttcgctttcttctttttccgatta |
31763240 |
T |
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| Q |
337 |
ctttggtttgcttttatg |
354 |
Q |
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|||||||||||||||||| |
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| T |
31763241 |
ctttggtttgcttttatg |
31763258 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 32696555 - 32696520
Alignment:
| Q |
188 |
cttacagcagaaacaagtttgaatgcactgaactca |
223 |
Q |
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| T |
32696555 |
cttacagcagaaacatgtttgaatgcactgaactca |
32696520 |
T |
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