View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_high_10 (Length: 254)
Name: NF13303_high_10
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 26484674 - 26484423
Alignment:
| Q |
19 |
gtttacagctgctaatttcattgacaagaactgcatttggtgataatgtacagttcagtta----------------ttcttaaaatagataccatatta |
102 |
Q |
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| T |
26484674 |
gtttacagctgctaatttcattgacaagaactgcatttggtgataatgtacagttcagttagatggacttgaaactattcttaaaatagataccatatta |
26484575 |
T |
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| Q |
103 |
taaactaaaacatgatagatcaaacaggactagaactctaacctcgacttgtctttgaagagactgaacatagttaataatttcatcaagcattccagct |
202 |
Q |
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| T |
26484574 |
taaactaaaacatgatagatcaaacaggactagaactctaacctcgacttgtctttgaagagactgaacatagttaataatttcatcaagcattccagct |
26484475 |
T |
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| Q |
203 |
ttgcctgcaattttgttgcatcctggtactaaatcttgcaaatacttcatcc |
254 |
Q |
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| T |
26484474 |
ttgcctgcaattttgttgcatcctggtactaaatcttgcaaatacttcatcc |
26484423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 54616120 - 54616011
Alignment:
| Q |
143 |
acctcgacttgtctttgaagagactgaacatagttaataatttcatcaagcattccagctttgcctgcaattttgttgcatcctggtactaaatcttgca |
242 |
Q |
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||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
54616120 |
acctcaacttgtttttgaagagactgaacatagttaatgatttcatcaagcattccagcttttcctgtaattttgttgcatcctggtactaaatcttgca |
54616021 |
T |
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| Q |
243 |
aatacttcat |
252 |
Q |
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| T |
54616020 |
aatacttcat |
54616011 |
T |
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