View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_high_5 (Length: 359)
Name: NF13303_high_5
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 8721637 - 8721987
Alignment:
| Q |
1 |
acatcaataccagtaatagcttgaaattttttaaataatttaatgtaattacaaatttcggtgtcaagctatatagtaggaaaagtaaagataccatacc |
100 |
Q |
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| T |
8721637 |
acatcaataccagtaatagcttgaaattttttaaataattgaatgtaattacaaatttcggtgtcaagctatatagtaggaaaagtaaagataccatacc |
8721736 |
T |
|
| Q |
101 |
aaaagatacgctccttcccatgacatggaatttgtggtatcttaatttctgaacatgatttccctgatatgtgagagcttattgttagtgataagtttaa |
200 |
Q |
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| T |
8721737 |
aaaagatacgctccttcccatgacatggaatttgtggtatcttaatttctgaacatgatttccctgatatgtgagagcttattgttagtgataagtttaa |
8721836 |
T |
|
| Q |
201 |
acttaaaaataataattatatataattaaaaacaaacgaaagctgaagttataccttgtatcttagcttcaatctcttgttcctggcattgttcttcaaa |
300 |
Q |
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| T |
8721837 |
acttaaaaataataattatatataattaaaaacaaacgaaagctgaagttataccttgtatcttagcttcaatctcttgttcctggcattgttcttcaaa |
8721936 |
T |
|
| Q |
301 |
aatttgtttaagtgatggaagtagtaaattaataatatatcggtgatgatg |
351 |
Q |
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| T |
8721937 |
aatttgtttaagtgatggaagtagtaaattaataatatatcggtgatgatg |
8721987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 351
Target Start/End: Original strand, 8676813 - 8677156
Alignment:
| Q |
7 |
ataccagtaatagcttgaaattttttaaataatttaatgtaattacaaatttcggtgtcaagctatatagta---------ggaaaagtaaagataccat |
97 |
Q |
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| T |
8676813 |
ataccagtaatagtatgaaaattttaaaataattgaatgtaatcacaaatgttagtgtcaagttatatagtatgtataaaaggaaaagtaaagataccat |
8676912 |
T |
|
| Q |
98 |
accaaaagatacgctccttcccatgacatggaatttgtggtatcttaatttctgaacatgatttccctgatatgtgagagcttattgttagtgataagtt |
197 |
Q |
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| T |
8676913 |
accaataaatacgctcctt--------atggagtttgtggtatcttcatttttgaacatgattttcctgatatg--agagcttattgttagtgataagtt |
8677002 |
T |
|
| Q |
198 |
taaacttaaaaataataattatatataattaaaaacaaacgaaagctgaagttataccttgtatcttagcttcaatctcttgttcctggcattgttcttc |
297 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| | ||||||||||||||||| || ||||||||||| |
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| T |
8677003 |
taaacttaaaaataataattatatataataaaaaataaacaaaagctgaagttataccttgtatccttgcttcaatctcttgttcttgacattgttcttc |
8677102 |
T |
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| Q |
298 |
aaaaatttgtttaagtgatggaagtagtaaattaataatatatcggtgatgatg |
351 |
Q |
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| T |
8677103 |
aaaaatttgtttaagagatggaagtagtaaattaatcatatatcggtgatgatg |
8677156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 78 - 351
Target Start/End: Original strand, 8593550 - 8593815
Alignment:
| Q |
78 |
aggaaaagtaaagataccataccaaaagatacgctccttcccatgacatggaatttgtggtatcttaatttctgaacatgatttccctgatatgtgagag |
177 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||| |||||| ||||| | |||| |||| |||| |
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| T |
8593550 |
aggaaaagtaaaaataccataccaatagatacgctccttatcatgaaatggagtttgtggtatctcaatctctgaatatgatgttcctggtatg--agag |
8593647 |
T |
|
| Q |
178 |
cttattgttagtgataagtttaaacttaaaaataataattatatataattaaaaacaaacgaaagctgaagttataccttgtatcttagcttcaatctct |
277 |
Q |
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| T |
8593648 |
cttattgttagtgataagtttaaagttat------taattatatataaataaaaacaaacgaaagctgaatttataccttgtatcttagcttcaatctct |
8593741 |
T |
|
| Q |
278 |
tgttcctggcattgttcttcaaaaatttgtttaagtgatggaagtagtaaattaataatatatcggtgatgatg |
351 |
Q |
| |
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| ||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
8593742 |
ttttcttgacattgttcttcaaaaatttgtttaagagatggaagtagtaaattaatcatatatcggtaatgatg |
8593815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 93 - 348
Target Start/End: Complemental strand, 21240213 - 21239961
Alignment:
| Q |
93 |
accataccaaaagatacgctccttcccatgacatggaatttgtggtatcttaatttctgaacatgatttccctgatatgtgagagcttattgttagtgat |
192 |
Q |
| |
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|||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||| |
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| T |
21240213 |
accataccaatagatacactccttatcatgacatggagtttgtggtatcttaatttctgaacatgattttcctgat----gagagcttgtttttagtgat |
21240118 |
T |
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| Q |
193 |
aagtttaaacttaaaaataataa-ttatatataattaaaaacaaacgaaagctgaagttataccttgtatcttagcttcaatctcttgttcctggcattg |
291 |
Q |
| |
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||||||||||||||||| || || |||||||||||||||||||||||||| || |||||||||||| || |||||||||||||||||| | || |||| |
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| T |
21240117 |
aagtttaaacttaaaaaaaaaaaattatatataattaaaaacaaacgaaaactaaagttatacctttgattttagcttcaatctcttgtccttgatattg |
21240018 |
T |
|
| Q |
292 |
ttcttcaaaaatttgtttaagtgatggaagtagtaaattaataatatatcggtgatg |
348 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
21240017 |
ttcttcaaaaatttgtttaagagatggaagtagtaaattaatcatatatcggtgatg |
21239961 |
T |
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