View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_low_1 (Length: 835)
Name: NF13303_low_1
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 7 - 812
Target Start/End: Complemental strand, 3047205 - 3046414
Alignment:
| Q |
7 |
acatatacttgcaatcaaaattttcaagttgcagcaaattttggagatccttctatgtattgtaatagtagtctatgtaaaggatgagctaaaaatttga |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3047205 |
acatatacttgcaatcaaaattttcaagttgcagcaaattttggagatccttctatgtattgtaatagtagtctatgtaaaggatgagctaaaaatttga |
3047106 |
T |
|
| Q |
107 |
tttatggatcgaggtttccgttattttagtttcttaagtttttggggcttcaaaattcataattaatttgtctttcatttaaaaactctaaaatatttat |
206 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3047105 |
tttatggattgaggttttcgttattttagtttcttaagttttcggggcttcaaaattcataattaattcgtctttcatttaaaaactctaaaatatttat |
3047006 |
T |
|
| Q |
207 |
gtgctagaggttcttatgatgttctaaacatgtctgtaaaataggagacctaaattgaacctgtgaatatatgctcagttggaacaatattgcgattttg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||| |||||| |||||||||||||||| ||||||| |
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| T |
3047005 |
gtgctagaggttcttatgatgttctaaacatgtctgtgaaataggataactaaattgaacctatgaatgtatgcttagttggaacaatattgtgattttg |
3046906 |
T |
|
| Q |
307 |
catattttggacaaaaattcaaaataaatcaaggtgtcgtagaaaaattatgaaacttttcaaatatcctttctgtatttattgtatagaggtctcttnn |
406 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| |
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| T |
3046905 |
catattttggtcaaaaattcaaaataaatcaaggtgtcgtagaaaaattatgaaacttttcagatatcctttctgtatatattgtatagagatctcttaa |
3046806 |
T |
|
| Q |
407 |
nnnnnnttagctcaaaattcaacttctaatcgaggtttccattannnnnnnnnnnnnnnnnnnnagggctttaagcatttataattaacttgtctcttgt |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3046805 |
aaaaaattagctcaaaattcaacttctaatcgaggtttccatta-ttttattttttgtgtttttagggctttaagcatttataattaacttgtctct--- |
3046710 |
T |
|
| Q |
507 |
cagaaagttataatgttttgtgggaggtcttattttaacatcctaaatatagttgcaaaatataatgaaaaatttctatctttcggtcatctttctagac |
606 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3046709 |
-agaaagttataatgtttcgtgggaggtcttattttaacatcttaaatatagttgcaaaatataatgaaaaatttctatctttcggtcatctttctagac |
3046611 |
T |
|
| Q |
607 |
tttatgtccatatgaaagaagaagnnnnnnntctattttcttctttcaatttcaaccaacacttgttc-nnnnnnnntaatttcaacccaacaattaata |
705 |
Q |
| |
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||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
3046610 |
tttatgtccatatgaaagaagaa----------aaaattcttcattcaatttcaaccaacacttgttcaaaaaaaaaaaaattcaacccaacaattaata |
3046521 |
T |
|
| Q |
706 |
atattttatgcaagacaaaaactaaggcaaaaatatatatgccacgtcataaaaaatacatgttgcaagattctttgccatgtcaacgtcttatgtatga |
805 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
3046520 |
atattttatgcaagacaaaaactaaggcaaaaatatatatgccacgtcataaaaaatacatgttgcaagattctctgtcatgtcaacgtcttatgtatga |
3046421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 771449 - 771535
Alignment:
| Q |
90 |
atgagctaaaaatttgatttatggatcgaggtttccgttattttagtttcttaagtttttggggcttcaaaattcataattaatttgt |
177 |
Q |
| |
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||||||| |||||| ||||||| | ||||| ||||||||||||| |||| || || ||||| ||| |||||||||||||||||||| |
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| T |
771449 |
atgagctcaaaattcgatttataggtcgagatttccgttatttt-gttttttgagcttttgacacttaaaaattcataattaatttgt |
771535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 36123296 - 36123252
Alignment:
| Q |
156 |
tcaaaattcataattaatttgtctttcatttaaaaactctaaaat |
200 |
Q |
| |
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| T |
36123296 |
tcaaaattcataattgatttgtctctcatttaaaaactctaaaat |
36123252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 548
Target Start/End: Original strand, 6184496 - 6184561
Alignment:
| Q |
483 |
atttataattaacttgtctcttgtcagaaagttataatgttttgtgggaggtcttattttaacatc |
548 |
Q |
| |
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|||||||||||| | |||||||||| ||||||||||| |||||||| | ||| |||||||||||| |
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| T |
6184496 |
atttataattaattcgtctcttgtcgaaaagttataattttttgtggaacgtcatattttaacatc |
6184561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 584
Target Start/End: Complemental strand, 33774294 - 33774193
Alignment:
| Q |
483 |
atttataattaacttgtctcttgtcagaaagttataatgttttgtgggaggtcttattttaacatcctaaatatagttgcaaaatataatgaaaaatttc |
582 |
Q |
| |
|
|||||||| ||| ||||| |||||||| || ||||||||| |||| ||||||||||||||||| ||||| || ||||||| || |||||||| ||| |
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| T |
33774294 |
atttataaataatttgtcccttgtcagtaaaatataatgttacgtggaaggtcttattttaacattctaaacatgcatgcaaaaaattatgaaaaaattc |
33774195 |
T |
|
| Q |
583 |
ta |
584 |
Q |
| |
|
|| |
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|
| T |
33774194 |
ta |
33774193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 32981508 - 32981420
Alignment:
| Q |
90 |
atgagctaaaaatttgatttatggatcgaggtttccgttattttagtttcttaagtttttggggcttcaaaa-ttcataattaatttgtc |
178 |
Q |
| |
|
||||||| |||||| ||||||| ||||||| |||||||| |||| |||| || || ||||| |||| |||| ||||||||||||||||| |
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| T |
32981508 |
atgagctcaaaattcgatttatagatcgagatttccgttgtttt-gttttttgagcttttgacgctttaaaaattcataattaatttgtc |
32981420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 7468777 - 7468815
Alignment:
| Q |
160 |
aattcataattaatttgtctttcatttaaaaactctaaa |
198 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||| |
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| T |
7468777 |
aattcataattaattcgtttttcatttaaaaactctaaa |
7468815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 40529801 - 40529889
Alignment:
| Q |
90 |
atgagctaaaaatttgatttatggatcgaggtttccgttattttagtttcttaagtttttggggc-ttcaaaattcataattaatttgtc |
178 |
Q |
| |
|
||||||| |||||||||||||| ||||||| |||||||| |||| |||| || || ||||| | || ||||||||||||||||||||| |
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| T |
40529801 |
atgagctcaaaatttgatttatagatcgagatttccgttgtttt-gttttttgagcttttgacactttaaaaattcataattaatttgtc |
40529889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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