View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_low_12 (Length: 337)
Name: NF13303_low_12
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 37789421 - 37789112
Alignment:
| Q |
18 |
aatacatgacaaattaagagtgaaaatacattctagtcgatgaaaaaatggggttcactttgatcccttggaaaagaaa-----gctccgttgtttttat |
112 |
Q |
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| T |
37789421 |
aatacatgacaaattaagagtgaaaatacattctagtcgatgaaaata--gggttcactttgatcccttaaaaaagaaattaaagctaggttgtttttat |
37789324 |
T |
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| Q |
113 |
ctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatgacgaattgaaccttcatctaaacattaaaaaacatggatttta |
212 |
Q |
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| T |
37789323 |
ctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatgacgaattgaaccttcatctaaacattaaaaaacatggatttta |
37789224 |
T |
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| Q |
213 |
tctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaattaaggaacaacatgctcgttgacaatacttgcaaattaaagaaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789223 |
tctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaattaaggaacaacatgctcgttgacaatacttgcaaattaaagaaaa |
37789124 |
T |
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| Q |
313 |
acatttaggtct |
324 |
Q |
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|||||||||||| |
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| T |
37789123 |
acatttaggtct |
37789112 |
T |
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