View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13303_low_13 (Length: 334)
Name: NF13303_low_13
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 49008759 - 49008455
Alignment:
| Q |
20 |
caacattggttactgttctttgaaattcttgtgtaatcacctttgatttaacactagcattattgaaaaaggaaataaaagaagggtaattaaggtccaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008759 |
caacattggttactgttctttgaaattcttgtgtaatcacctttgatttaacactagcattattgaaaaaggaaataaaagaagggtaattaaggtccaa |
49008660 |
T |
|
| Q |
120 |
agaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtgaagtttaatgcacatagaagattcacataatcttgtttt |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008659 |
agaagggttagaacaattgttaaaagacgatctcgtgatggctgcgatattcttctgagtgaagtttaatgcacatagaagattcacataatcttgtttt |
49008560 |
T |
|
| Q |
220 |
cctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008559 |
cctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgt |
49008460 |
T |
|
| Q |
320 |
ctgtg |
324 |
Q |
| |
|
||||| |
|
|
| T |
49008459 |
ctgtg |
49008455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 8945531 - 8945712
Alignment:
| Q |
81 |
attgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtg |
180 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||||| ||||| | |||||||| || ||||| ||||| || || | | ||| || || || ||| |
|
|
| T |
8945531 |
attgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtgatgtttttttgtgtg |
8945630 |
T |
|
| Q |
181 |
aagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggat |
262 |
Q |
| |
|
||||| | |||||| |||||||| |||||||||||| || ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
8945631 |
aagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggat |
8945712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 290
Target Start/End: Complemental strand, 8958527 - 8958330
Alignment:
| Q |
93 |
aataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtgaagtttaatgca |
192 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||| |||| || |||| ||||| ||||||| | ||| || || || | | || | | |||| |
|
|
| T |
8958527 |
aataaaagaagggtagttaagatccaaagaaggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgtttttttgtgagtagctaagtgca |
8958428 |
T |
|
| Q |
193 |
catagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaagg |
290 |
Q |
| |
|
|| |||||||| |||||||||||| || ||||||||| ||| ||||| |||||||||||||| ||||| | ||| || |||||||| || ||||| |
|
|
| T |
8958427 |
caaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaagg |
8958330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 278
Target Start/End: Complemental strand, 8974937 - 8974752
Alignment:
| Q |
93 |
aataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtgaagtttaatgca |
192 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| | |||||||| ||| ||| ||||| || ||| | ||| || || || |||||||| | |||| |
|
|
| T |
8974937 |
aataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgtttttttgtgtgaagttgagtgca |
8974838 |
T |
|
| Q |
193 |
catagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcc |
278 |
Q |
| |
|
|| |||||||| |||||||||||| || ||||||||||||||||||| | ||||||| | ||||| |||||||| || ||||| |
|
|
| T |
8974837 |
caaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatgaccagctcc |
8974752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 8963456 - 8963342
Alignment:
| Q |
178 |
gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc |
277 |
Q |
| |
|
|||||||| | |||||| |||| ||| |||||||||||| || |||||||||||| ||||| ||||||||| |||| || |||||||| || |||| |
|
|
| T |
8963456 |
gtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctc |
8963357 |
T |
|
| Q |
278 |
ccaaagctaaaggtg |
292 |
Q |
| |
|
|||| || ||||||| |
|
|
| T |
8963356 |
ccaatgcaaaaggtg |
8963342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 81 - 292
Target Start/End: Original strand, 34962314 - 34962525
Alignment:
| Q |
81 |
attgaaaaaggaaataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtg |
180 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||| ||||| ||||| | |||||||| || |||| ||||| ||||||| | ||| || || || | | |
|
|
| T |
34962314 |
attgaaaaaagcaataaaagaagggtagttaagatccaaggaaggtttagaacaatcattggaagaggatcttgtgatggtagtgatgtttttttgtgag |
34962413 |
T |
|
| Q |
181 |
aagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctccca |
280 |
Q |
| |
|
| || | |||||| ||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||| ||||| | ||| || ||||||| |
|
|
| T |
34962414 |
tatttaagtgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctccca |
34962513 |
T |
|
| Q |
281 |
aagctaaaggtg |
292 |
Q |
| |
|
| || ||||||| |
|
|
| T |
34962514 |
atgcaaaaggtg |
34962525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 21686706 - 21686934
Alignment:
| Q |
93 |
aataaaagaagggtaattaaggtccaaagaagggtcagaacaattgttaaaagacgatctcgtgatgggcgcgatattcttctgagtgaagtttaatgca |
192 |
Q |
| |
|
||||||||||||||| ||||| || || ||||| | ||| |||| || ||||| ||||| || |||| ||| || || || |||||||| | |||| |
|
|
| T |
21686706 |
aataaaagaagggtagttaagatctaaggaaggtttagagcaatcattgaaagaagatcttgtaatggcactgatgtttttttgtgtgaagttaagtgca |
21686805 |
T |
|
| Q |
193 |
catagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtg |
292 |
Q |
| |
|
|| |||||||| | |||||||||| || |||||||||||| |||||||||||||||||||| || || ||||| || |||||||| || ||||| | |
|
|
| T |
21686806 |
caaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctcccaatgcaaaaggag |
21686905 |
T |
|
| Q |
293 |
aagctggtctgtaaccattaccaatgtct |
321 |
Q |
| |
|
|||| ||||| |||||| ||||||||| |
|
|
| T |
21686906 |
ttgctgctctgttaccatttccaatgtct |
21686934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University