View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_low_14 (Length: 322)
Name: NF13303_low_14
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 8721366 - 8721660
Alignment:
| Q |
16 |
caagttattggtagaggatcaccaccatgcatgtattcatcacctctatttttgtattgaaacatcatttcaaagcgtggtgtgatacttccgttgcgta |
115 |
Q |
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| T |
8721366 |
caagttatcagtagaggatcaccaccatgcatgtattcatcacctctatttttgtattgaaacttcatttcaaagcgtggtgtaatacttccgttgcgta |
8721465 |
T |
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| Q |
116 |
tttctttgcaacaactaaggcatatttcaaaggaacatttaggacagcttctataaaggtcaacaattgaagtagcacaatgatcactgctc---nnnnn |
212 |
Q |
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| T |
8721466 |
tttctttgcaacaactaaggcatatttcaaaggaacatttaggacagcttctataaaggtcaacaattgaagtagcacaatgatcactgctcaaaaaaaa |
8721565 |
T |
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| Q |
213 |
nnnntgataataaaagaattgtgtgctaagtatgctataaaacactcacatacatcagacacggcacagttacatcaataccagtaatagcttga |
307 |
Q |
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| T |
8721566 |
aaaatgataataaaagaattgtgagctaagtatgctataaaacactcacatacatcagacacggcacagttacatcaataccagtaatagcttga |
8721660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 8676511 - 8676698
Alignment:
| Q |
20 |
ttattggtagaggatcaccaccatgcatgtattcatcacctctatttttgtattgaaacatcatttcaaagcgtggtgtgatacttccgttgcgtatttc |
119 |
Q |
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| T |
8676511 |
ttattggtagaggatcaccaccatgcatgtattcatcacctctatttttgtattgaaacatcatttcaaagcgtggtgtgatacttccgttgcgtatttc |
8676610 |
T |
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| Q |
120 |
tttgcaacaactaaggcatatttcaaaggaacatttaggacagcttctataaaggtcaacaattgaagtagcacaatgatcactgctc |
207 |
Q |
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| T |
8676611 |
tttgcaataactaaggcatatttcaaaggaacatttaggacagcttctataaaggtcaacaattgaagtagcacaatgatcactgctc |
8676698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 8593183 - 8593372
Alignment:
| Q |
16 |
caagttattggtagaggatcaccaccatgcatgtattcatcacctctatttttgtattgaaacatcatttcaaagcgtggtgtgatacttccgttgcgta |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8593183 |
caagttattggtagaggatcaccgccatgcatgtattcatcacctctatttttgtattgaaacatcatttcaaagcgtggtgtgatacttccgttgcgta |
8593282 |
T |
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| Q |
116 |
tttctttgcaacaactaaggcatatttcaaaggaacatttaggacagcttctataaaggtcaacaattgaagtagcacaatgatcactgc |
205 |
Q |
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| T |
8593283 |
tttctttgcaacaactaaggcatatttcaaaggaacatttaggacaacttctataaaggtcaacaattgaagtagcacaatgatcactgc |
8593372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 8676742 - 8676825
Alignment:
| Q |
219 |
ataataaaagaattgtgtgctaagtatgctataaaacactcacatacatcagacacggcacagttacatcaataccagtaatag |
302 |
Q |
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| T |
8676742 |
ataataaaagaattatgagctaactatactataaaacactcacatacatcagacacgacacggttacatatataccagtaatag |
8676825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 55412616 - 55412711
Alignment:
| Q |
112 |
cgtatttctttgcaacaactaaggcatatttcaaaggaacatttaggacagcttctataaaggtcaacaattgaagtagcacaatgatcactgctc |
207 |
Q |
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| T |
55412616 |
cgtatttctttgcaacatttgaggcaaagctcataggaacaatttgggcagattcgatgaaggtcaacaattgaagtagcacaatgatcactgctc |
55412711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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