View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_low_18 (Length: 240)
Name: NF13303_low_18
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 25439725 - 25439920
Alignment:
| Q |
22 |
gaagaccgaagggtggtggtggtggtgctgtgaacggagctcatagtggatatgaggagagggatggtggtgggtgatgtgatggaagaagaaggttgag |
121 |
Q |
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| T |
25439725 |
gaagaccaaagggtggtggtggtggtgctgtgaatggagctcatagtggatatgaggagagggatgttggttggtgatgtgatggaagaagaaggttgag |
25439824 |
T |
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| Q |
122 |
aggtgctgttgttgtttgtgcgaactgagaaggaggaacggcgaaatgacgacagttatcaatggtcaatggtcggagagaggagccgtggttgagggt |
220 |
Q |
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| T |
25439825 |
agg---tgttgttgtttgtgcgaactgagaaggaggaacggcgaaatgacgacagttatcaatggtcaatggtcggagagaggagccgtggttgggggt |
25439920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 36829954 - 36829831
Alignment:
| Q |
50 |
tgtgaacggagctcatagtggatatgaggagagggatggtggtgggtgatgtgatggaagaagaaggttgagaggtgctgttgttgtttgtgcgaactga |
149 |
Q |
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| T |
36829954 |
tgtgaacggagattggagtggatatgaggagagggatggtggt-ggtgatgttgtgatggaagaaggctgagaggtggtggtggtgttggtgcaaactga |
36829856 |
T |
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| Q |
150 |
gaaggaggaacggcgaaatgacgac |
174 |
Q |
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| T |
36829855 |
gaaggaggaggagcgaaatgacgac |
36829831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 20283481 - 20283427
Alignment:
| Q |
38 |
tggtggtggtgctgtgaacggagctcatagtggatatgaggagagggatggtggt |
92 |
Q |
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| T |
20283481 |
tggtggtgctgctgtgtacggagatcgaagtggatatgaggagagggatggtggt |
20283427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 36682943 - 36683053
Alignment:
| Q |
50 |
tgtgaacggagctcatagtggatatgaggagagggatggtggtg--ggtgatgtgatggaagaagaaggttgagaggtgctgttgttgtttgtgcgaact |
147 |
Q |
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| T |
36682943 |
tgtgaacggagatcggagtggatatgaggagagagatggtggtggtgatgttgtgatggacgaagaaagctaagaggtggtggtggtgttggtgcgaact |
36683042 |
T |
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| Q |
148 |
gagaaggagga |
158 |
Q |
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| T |
36683043 |
gagaaggagga |
36683053 |
T |
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