View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_low_2 (Length: 724)
Name: NF13303_low_2
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 27712768 - 27712388
Alignment:
| Q |
10 |
acatcatcacactttttcttcacacaattgagcccaagtaaaaacccgaaaatctcttattccaagctcatttggattccaccaccaatctaactctcgt |
109 |
Q |
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| T |
27712768 |
acatcatcacaccttttcttcacacaattgagcccaagtaaaaacccgaaaatctcttattccaagctcattcggattccaccaccaatctaactctcgt |
27712669 |
T |
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| Q |
110 |
ttgttggttaagacatcataatatgcccaaaaacttgagtctagaagctttctcgctatctnnnnnnnnnnnnnnn--tcaatcggtccaccagactccg |
207 |
Q |
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| T |
27712668 |
ttgctggttaagacatcataatatgcccaaaaacttgagtatagaagctttctcgctatctaaaaataaaataaaaaatcaatcggtccaccagactccg |
27712569 |
T |
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| Q |
208 |
aaaacaaatcactaaggcacccctaaactctcggcataacgtaaaagacaccataaccagcccaaaaacttgcaattaaacactaacatccgatctcaaa |
307 |
Q |
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| T |
27712568 |
aaaacaaatcaccaagggacccctaaactctcggtctaacgtaaaagacaccataaccaacccagaaacctgcaattaaacactaacatccgatctcaaa |
27712469 |
T |
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| Q |
308 |
acaaaagcgattgacctccataattcaaaaaccaaatcactaaggcagtcaaccgatgatgcggtagcgtaatttggtcca |
388 |
Q |
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| T |
27712468 |
acaaaagcgattgacctctagaattcaaaaaccaaatcactaagacagtcaaccgatgatgcggtggcgcaatttggtcca |
27712388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 449 - 702
Target Start/End: Complemental strand, 27712309 - 27712056
Alignment:
| Q |
449 |
gagctagcggcagtagaggtggacccaaattaaaggtcaccatgagtagacatcagaagaaaatcaaatgtagtccctaacataacacgtagcataaaac |
548 |
Q |
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| T |
27712309 |
gagctagtggcagtagaggtggacccaaattaaaggtcaccataagtagacatcagaagaaaatcaaatgtagtccctaacataacacgtagcataaaac |
27712210 |
T |
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| Q |
549 |
acatgctattaacccaaaataacaacaccgacaaccaaaattaacaaaaatagtccctctcactcttcactttcacaaagtatggacaagagatacaaga |
648 |
Q |
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| T |
27712209 |
acatgctattaacccaaaataacaacaccgacaacccaaattaacaaaaatagtccctctcactcttcactttcacaaagtatggacaagagatacaaga |
27712110 |
T |
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| Q |
649 |
gcacaataacaccagtcattatatgtctttctctaaaataacacagtaactact |
702 |
Q |
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| T |
27712109 |
gcacaataacaccattcattttatgtctttctctaaaataacacagtaactact |
27712056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 24712603 - 24712536
Alignment:
| Q |
252 |
aagacaccataaccagcccaa-aaacttgcaattaaacactaacatccgatctcaaaacaaaagcgat |
318 |
Q |
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| T |
24712603 |
aagacaccatgaccagccaaacaaacttgcaattagacactaacaaccgatctcgaagcaaaaacgat |
24712536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 51065897 - 51065931
Alignment:
| Q |
189 |
atcggtccaccagactccgaaaacaaatcactaag |
223 |
Q |
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| T |
51065897 |
atcggtccaccagactcccaaaacaaatcactaag |
51065931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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