View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_low_22 (Length: 204)
Name: NF13303_low_22
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 9966553 - 9966393
Alignment:
| Q |
24 |
cgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtggccattttggtagttttgtggaaatggtgtgtttaagattt |
123 |
Q |
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| T |
9966553 |
cgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtggccattttggtagttttgtggaaatggtatgtttaagattt |
9966454 |
T |
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| Q |
124 |
gtgtttatatgtgtattatttcatgcatggtataagaaagatgaacggtggagtttgggat |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9966453 |
gtgtttatatgtgtattatttcatgcatggtataagaaagatgaacggtggagtttgggat |
9966393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 9936384 - 9936229
Alignment:
| Q |
24 |
cgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtggccattttggtagttttgtggaaatggtgtgtttaagattt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9936384 |
cgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtggccattttggtagttttgtggaaatggtgtgtttaaggttt |
9936285 |
T |
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| Q |
124 |
gtgtttatatgtgtattatttcatgcatggtataagaaagatgaacggtggagtttgggat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9936284 |
gtgtttatatgtgtattatttcatgcatggtataagaa-----aacggtggagtttgggat |
9936229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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