View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_low_4 (Length: 673)
Name: NF13303_low_4
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Complemental strand, 39952275 - 39951619
Alignment:
| Q |
1 |
catagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952275 |
catagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaa |
39952176 |
T |
|
| Q |
101 |
ttactctcagccaagttatatataaccaagtaattgcaatcaaatctaaagctaaatcctttggtgttacagggagaaaaatcaacaaacataatcaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
39952175 |
ttactctcagccaagttatatataaccaagtaattgcaatcaaatctaaagctaaatcccttggt--tacagggagaaaaatcaacaaacataatcaaga |
39952078 |
T |
|
| Q |
201 |
gatatttgctcaacataatttaaatctaatacatattttaacaacaaaatcagagtgcccatggataaagataaacgattgaatattttcaggcaatgag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39952077 |
gatatttgctcaacataatttaaatctaatacatattttaacaacaaaatcagagtgcccatggataaagataaacgattgaatattttcaggcaatgag |
39951978 |
T |
|
| Q |
301 |
tggatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacacagaccattcaagt |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39951977 |
tagatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcacccatttggagaccattcacttgacacagaccattcaagt |
39951878 |
T |
|
| Q |
401 |
tgtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcttacgaagtaaatgtttgcagttgtgcatgcattt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
39951877 |
tgtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcatacgaagtaaatgtttgcagttgtgcatgcattt |
39951778 |
T |
|
| Q |
501 |
gagcttgtgtcatgtgaaaatacatcagatacatgccagaa--ataaacttcagtaaatgatattctaaatagagaagagaataaaatcaaagtagtcaa |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
39951777 |
gagcttgtgtcatgtgaaaatacatcagatacatgccagaaatataaacttcagtaaatgatattctaaatacagaagagaataaaatcaaagtagtcaa |
39951678 |
T |
|
| Q |
599 |
cagtgttatatgtatatgcatttcccacaccaatataccaaagaagtaggacagttagt |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39951677 |
cagtgttatatgtatatgcatttcccacaccaatataccaaagaagtaggacagttagt |
39951619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 1e-86; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 34230287 - 34230526
Alignment:
| Q |
2 |
atagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaat |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||| || ||||| |
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|
| T |
34230287 |
atagtatgttttctgattcatctatcacctcataaatgtcatcaaacttatcacttttaataattgttcaatgagatgatttgaattgcttgagagaaat |
34230386 |
T |
|
| Q |
102 |
tactctcagccaagttatatataaccaagtaattgcaatcaaatctaaagctaaatcctttggtgttacagggagaaaaatcaacaaacataatcaagag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||| | |||||| ||| |||||||||| |||| ||||||||||||||||||| |
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|
| T |
34230387 |
tactctcagccaagttatatataaccaagggatagcaatcaaatctaaaaccaaatcccttg--gttacagggataaaagccaacaaacataatcaagag |
34230484 |
T |
|
| Q |
202 |
atatttgctcaacataatttaaatctaatacatattttaaca |
243 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
34230485 |
atatttactcaacataatttaaatctaatacatattttaaca |
34230526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 239 - 546
Target Start/End: Original strand, 34230589 - 34230932
Alignment:
| Q |
239 |
taacaacaaaatcagagtgcccatggataaagataaacgattgaatattttcaggcaatgagtggatca----------------------tacccatta |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
34230589 |
taacaacataatcagagtgcccatggataaagataaacaattgaatattttcaggcaatgagtagatcaaggccccaccagtggaaagacatacccatta |
34230688 |
T |
|
| Q |
317 |
tcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacacagaccattca---------------agtt |
401 |
Q |
| |
|
|||||||||||||| || | ||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || | |
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|
| T |
34230689 |
tcaacttgaagccttggagctgttgttgctgtcatgaaatagcacccatctggagaccattcacttgacacagaccattcagctttggttgatgcaagct |
34230788 |
T |
|
| Q |
402 |
gtttcctttctacgtaatcccaaaaatacctagaacagcataatgaaaaatacatgaattcttcttacgaagtaaatgtttgcagttgtgcatgcatttg |
501 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||| || ||||||| ||||||||||| |||||||||||| || |
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|
| T |
34230789 |
gtttcctttccacgtaatcccaaaa-tacctagaacaacataatgaaaaacacatgaattcctcatacgaagcaaatgtttgcaattgtgcatgcatctg |
34230887 |
T |
|
| Q |
502 |
agcttgtgtcatgtgaaaatacatcagatacatgccagaaataaa |
546 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
34230888 |
agcttgtgtcatttgaaaatacatcagatacttgccagaaataaa |
34230932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 28546919 - 28547073
Alignment:
| Q |
64 |
attgttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagtaattgcaatcaaatctaaagctaaatcctttg |
163 |
Q |
| |
|
|||||| |||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||| ||| |
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|
| T |
28546919 |
attgttaaatgagatgatttgaattgcttgagaaaaattactctcagccttgttatttataaccaagtgattgcaatcaaatctacagctaaatcccttg |
28547018 |
T |
|
| Q |
164 |
gtgttacagggagaaaaatcaacaaacataatca-agagatatttgctcaacataat |
219 |
Q |
| |
|
|| ||||| ||||| |||||||| |||| | |||||||||| ||||||||||| |
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|
| T |
28547019 |
--attgtagggataaaaaccaacaaacctaatgatagagatatttactcaacataat |
28547073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 554 - 641
Target Start/End: Original strand, 49198344 - 49198431
Alignment:
| Q |
554 |
aaatgatattctaaatagagaagagaataaaatcaaagtagtcaacagtgttatatgtatatgcatttcccacaccaatataccaaag |
641 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||| ||||||||| ||||| |||||||| |||| |
|
|
| T |
49198344 |
aaatgatattctaaatagagaagggaataaaattaaattagtcaacaatgttatatgtgtatgcatttgccacaacaatatactaaag |
49198431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 8e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 30339611 - 30339468
Alignment:
| Q |
1 |
catagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| |
|
|
| T |
30339611 |
catagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaatgaaatgatttgaattgcttgagagaaa |
30339512 |
T |
|
| Q |
101 |
ttactctcagccaagttatatataaccaagtaattgcaatcaaa |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30339511 |
ttactctcagccaagttatatataaccaagtgattgcaatcaaa |
30339468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 30339394 - 30339345
Alignment:
| Q |
238 |
ttaacaacaaaatcagagtgcccatggataaagataaacgattgaatatt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30339394 |
ttaacaacaaaatcagagtgcccatggataaagataaacaattgaatatt |
30339345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 10116848 - 10116916
Alignment:
| Q |
68 |
ttgaatgagatgatttgaattgcttcagcgaaattactctcagccaagttatatataaccaagtaattg |
136 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||| | |||||| ||||| |||||||||||||||| |
|
|
| T |
10116848 |
ttgaatgaattgatttgaattgcttgagagaaattattgtcagccctgttatttataaccaagtaattg |
10116916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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