View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13303_low_5 (Length: 670)

Name: NF13303_low_5
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13303_low_5
NF13303_low_5
[»] chr4 (4 HSPs)
chr4 (13-653)||(56234196-56234836)
chr4 (72-107)||(55953155-55953190)
chr4 (67-105)||(33376562-33376600)
chr4 (78-107)||(44128049-44128078)
[»] chr7 (4 HSPs)
chr7 (63-603)||(13749727-13750262)
chr7 (13-68)||(13750372-13750427)
chr7 (16-65)||(40739077-40739126)
chr7 (67-107)||(43006721-43006761)
[»] chr3 (3 HSPs)
chr3 (344-593)||(34014889-34015139)
chr3 (556-609)||(46693296-46693349)
chr3 (72-109)||(54353371-54353408)
[»] chr8 (2 HSPs)
chr8 (14-65)||(26365839-26365890)
chr8 (148-198)||(44189703-44189752)
[»] chr1 (3 HSPs)
chr1 (14-53)||(45228698-45228737)
chr1 (67-107)||(16217775-16217815)
chr1 (16-65)||(6242204-6242253)
[»] chr6 (2 HSPs)
chr6 (63-108)||(21455462-21455507)
chr6 (63-107)||(1756582-1756626)
[»] chr2 (1 HSPs)
chr2 (27-68)||(27948838-27948879)


Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 13 - 653
Target Start/End: Complemental strand, 56234836 - 56234196
Alignment:
Q  13 tcatcaaattatgcttttaaaaccccgatcttcatgtcttctactctcaaaaacccttgaatctagaataaacaccaccaccatcatctaactcaattta 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  56234836 tcatcaaattatgcttttaaaaccccaatcttcatgtcttctactctcaaaaacccttgaatctagaataaacaccgccaccatcatctaactcaattta 56234737  T
Q  113 tcctttagttttattttatagagtgaatgccaacggccaacaacttatatgagaaattatgcggggctactccagaagttgcatcttccccacttcaaac 212  Q
    |||||||||||| |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  56234736 tcctttagttttgt-----agagtgaatgccaacggccaacaacttatatgagaaattatgcggggctactccagaagttgcatcttctccacttcaaac 56234642  T
Q  213 acccaaaccctttattttcttcatattctcagccaaatcccnnnnnnnttcaacaacttcatttatttccaaaacgcaca---tcacagtatatgattta 309  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||   |||| ||||||||||||    
T  56234641 acccaaaccctttattttcttcatattctcagccaaatcccaaaaaaattcaacaacttcatttatttccaaaatgcacaacatcacggtatatgattta 56234542  T
Q  310 caattcaaccttttgggatgattttccgaaacccacccatcaaaagaatcgtgatttctcaaacccagacacctagattcaaacctagaaaaaccaaagc 409  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56234541 caactcaaccttttgggatgattttccgaaacccacccatcaaaagaatcgtgatttctcaaacccagacacctagattcaaacctagaaaaaccaaagc 56234442  T
Q  410 aataaaactaaatccaaattggaacgaatctcgaaaaaa-cggaaggaatcccaacagaaaatggttccgatctgaagggatccaagaatgaagaagatg 508  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  56234441 aataaaactaaatccaaattggaatgaatctcgaaaaaaactgaaggaatcccaacagaaaatggttccgatctgaagggatccaagaatgaagaagacg 56234342  T
Q  509 aaggtgaagaaaattcagagttttgatttcttaattaaattgataacatgggtttcatttttaggaatttgtttataagaaagaaagaataaacatggaa 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  56234341 aaggtgaagaaaattcagagttttgatttcttaattaaattgataacatgggtttcatttttaggaatttgtttataagaaagaaagaataaacactgaa 56234242  T
Q  609 g-nnnnnnnngaagaagatcatgtgtaggtggaaggtgataatatt 653  Q
    |         ||||||||||||||||| |||| |||||||||||||    
T  56234241 gaaaaaaaaagaagaagatcatgtgtaagtgggaggtgataatatt 56234196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 55953155 - 55953190
Alignment:
Q  72 aatctagaataaacaccaccaccatcatctaactca 107  Q
    ||||| ||||||||||||||||||||||||||||||    
T  55953155 aatctggaataaacaccaccaccatcatctaactca 55953190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 33376562 - 33376600
Alignment:
Q  67 ccttgaatctagaataaacaccaccaccatcatctaact 105  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  33376562 ccttaaatctggaataaacaccaccaccatcatctaact 33376600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 44128078 - 44128049
Alignment:
Q  78 gaataaacaccaccaccatcatctaactca 107  Q
    ||||||||||||||||||||||||||||||    
T  44128078 gaataaacaccaccaccatcatctaactca 44128049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 63 - 603
Target Start/End: Complemental strand, 13750262 - 13749727
Alignment:
Q  63 aaacccttgaatctagaataaacaccaccaccatcatctaactcaatttatcctttagttttattttatagagtgaatgccaacggccaacaacttatat 162  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     ||||| ||||||||||||||||||||||||||||||||    
T  13750262 aaacccttgaatctagaataaacaccaccatcatcatctaactcaatttatccttta-----attttgtagagtgaatgccaacggccaacaacttatat 13750168  T
Q  163 gagaaattatgcggggctactccagaagttgcatcttccccacttcaaacacccaaaccctttattttcttcatattctcagccaaatcccnnnnnnntt 262  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||   || ||||||||| ||||||||||||| ||||||||||||       ||    
T  13750167 gagaaattatgcggggctactccagaagttgcatcttctccagttcaaaacacctaaccctttagtttcttcatattcccagccaaatcccaaaaaaatt 13750068  T
Q  263 caacaacttcatttatttccaaaacgcaca---tcacagtatatgatttacaattcaaccttttgggatgattttccgaaacccacccatcaaaagaatc 359  Q
    ||||||||||||||||||||||||||||||   |||| ||||||||||||||  |||||||||||||||||||||| ||||| ||    |||||||||||    
T  13750067 caacaacttcatttatttccaaaacgcacagcatcacggtatatgatttacagctcaaccttttgggatgattttcagaaacaca----tcaaaagaatc 13749972  T
Q  360 gtgatttctcaaacccagacacctagattcaaacctagaaaaaccaaagcaataaaactaaatccaaattggaacgaatctcgaaaaaa-cggaaggaat 458  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |  |||||| ||||||||||    
T  13749971 gtgatttctcaaacccagacacctagattcaaacctagaataaccaaagcattaaaactaaatccaaattggaatgaatttgaaaaaaaacggaaggaat 13749872  T
Q  459 cccaacagaaaatggttccgatctgaagggatccaagaatgaagaagatgaaggtgaagaaaattcagagttttgatttcttaattaaattgataacatg 558  Q
    ||||||||||| ||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  13749871 cccaacagaaattggattagatctgaagggatccaagaatgaagaagacgaaggtgaagaaaattcagagtttagatttcttaattaaattgaaaatatg 13749772  T
Q  559 ggtttcatttttaggaatttgtttataagaaagaaagaataaaca 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13749771 ggtttcatttttaggaatttgtttataagaaagaaagaataaaca 13749727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 13750427 - 13750372
Alignment:
Q  13 tcatcaaattatgcttttaaaaccccgatcttcatgtcttctactctcaaaaaccc 68  Q
    |||||||||||||||||||||||||| || |||||||||||| |||||||||||||    
T  13750427 tcatcaaattatgcttttaaaaccccaatattcatgtcttcttctctcaaaaaccc 13750372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 40739077 - 40739126
Alignment:
Q  16 tcaaattatgcttttaaaaccccgatcttcatgtcttctactctcaaaaa 65  Q
    |||||||||| |||||||| ||| ||||||||||||||| ||||||||||    
T  40739077 tcaaattatgtttttaaaaacccaatcttcatgtcttcttctctcaaaaa 40739126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 43006721 - 43006761
Alignment:
Q  67 ccttgaatctagaataaacaccaccaccatcatctaactca 107  Q
    |||| ||||| |||||||||||||||||||||| |||||||    
T  43006721 ccttaaatctggaataaacaccaccaccatcatgtaactca 43006761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 344 - 593
Target Start/End: Original strand, 34014889 - 34015139
Alignment:
Q  344 acccatcaaaagaatcgtgatttctcaaacccagacacctagattcaaacctagaaaaaccaaagcaataaaactaaatccaaattggaacgaatctcga 443  Q
    ||||||||||||||||||||||||||||| || || ||||| ||||||||| |||||| |||||  || ||| ||||||||||||||||| ||||||  |    
T  34014889 acccatcaaaagaatcgtgatttctcaaaaccggatacctaaattcaaacccagaaaa-ccaaaataagaaatctaaatccaaattggaatgaatctgaa 34014987  T
Q  444 aa--aaacggaaggaatcccaacagaaaatggttccgatctgaagggatccaagaatgaagaagatgaaggtgaagaaaattcagagttttgatttctta 541  Q
    ||  |||   || ||||| ||||||||||||| |  ||| |||||||||||| |||||||||||| ||||||||| |||| | ||||||| |||||||||    
T  34014988 aaggaaaaaaaatgaatcgcaacagaaaatggatttgatatgaagggatccaggaatgaagaagacgaaggtgaacaaaacttagagtttagatttctta 34015087  T
Q  542 attaaattgataacatgggtttcatttttaggaatttgtttataagaaagaa 593  Q
    |||||||||| || |||||||| ||||| | |||||||||||||||||||||    
T  34015088 attaaattgaaaatatgggtttgattttcaagaatttgtttataagaaagaa 34015139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 609
Target Start/End: Complemental strand, 46693349 - 46693296
Alignment:
Q  556 atgggtttcatttttaggaatttgtttataagaaagaaagaataaacatggaag 609  Q
    |||||||| ||||| |||||||||||||||||||| ||||||| ||||| ||||    
T  46693349 atgggtttgattttaaggaatttgtttataagaaataaagaattaacattgaag 46693296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 54353371 - 54353408
Alignment:
Q  72 aatctagaataaacaccaccaccatcatctaactcaat 109  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  54353371 aatctagaattaacaccaccaccatcatataactcaat 54353408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 26365890 - 26365839
Alignment:
Q  14 catcaaattatgcttttaaaaccccgatcttcatgtcttctactctcaaaaa 65  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  26365890 catcaaattatgcttttaaaaccccaatcttcatgtcttcttctctcaaaaa 26365839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 44189703 - 44189752
Alignment:
Q  148 gccaacaacttatatgagaaattatgcggggctactccagaagttgcatct 198  Q
    |||||||||||||||| |||||| ||| ||||||||||||||| |||||||    
T  44189703 gccaacaacttatatgtgaaattctgc-gggctactccagaagctgcatct 44189752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 45228698 - 45228737
Alignment:
Q  14 catcaaattatgcttttaaaaccccgatcttcatgtcttc 53  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  45228698 catcaaattatgcttttaaaaccccaatcttcatgtcttc 45228737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 16217775 - 16217815
Alignment:
Q  67 ccttgaatctagaataaacaccaccaccatcatctaactca 107  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  16217775 ccttaaatctggaataaacaccaccaccatcatctaactca 16217815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 6242253 - 6242204
Alignment:
Q  16 tcaaattatgcttttaaaaccccgatcttcatgtcttctactctcaaaaa 65  Q
    |||||||||| |||||||| | | ||||||||||||||| ||||||||||    
T  6242253 tcaaattatgtttttaaaaactcaatcttcatgtcttcttctctcaaaaa 6242204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 21455462 - 21455507
Alignment:
Q  63 aaacccttgaatctagaataaacaccaccaccatcatctaactcaa 108  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||    
T  21455462 aaactcttaaatctagaattaacaccaccaccatcatctaactcaa 21455507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 1756582 - 1756626
Alignment:
Q  63 aaacccttgaatctagaataaacaccaccaccatcatctaactca 107  Q
    |||||||| ||| |||||| |||| ||||||||||||||||||||    
T  1756582 aaacccttaaatttagaatcaacatcaccaccatcatctaactca 1756626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 27948879 - 27948838
Alignment:
Q  27 ttttaaaaccccgatcttcatgtcttctactctcaaaaaccc 68  Q
    |||||||||||| ||||| ||||||||| |||||||||||||    
T  27948879 ttttaaaaccccaatctttatgtcttcttctctcaaaaaccc 27948838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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