View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13303_low_6 (Length: 599)

Name: NF13303_low_6
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13303_low_6
NF13303_low_6
[»] chr5 (8 HSPs)
chr5 (323-597)||(28201753-28202019)
chr5 (71-191)||(28202672-28202792)
chr5 (408-596)||(25674013-25674216)
chr5 (218-258)||(28201999-28202039)
chr5 (70-157)||(28197834-28197921)
chr5 (18-67)||(28202827-28202876)
chr5 (400-433)||(27056064-27056097)
chr5 (26-67)||(28197955-28197996)
[»] chr4 (2 HSPs)
chr4 (404-576)||(19665375-19665562)
chr4 (373-506)||(34828106-34828240)
[»] scaffold0054 (1 HSPs)
scaffold0054 (422-597)||(31928-32119)
[»] chr3 (3 HSPs)
chr3 (521-597)||(39044494-39044570)
chr3 (416-483)||(34157851-34157918)
chr3 (404-440)||(43277413-43277449)
[»] chr8 (1 HSPs)
chr8 (401-503)||(26162294-26162397)
[»] chr7 (3 HSPs)
chr7 (408-506)||(1322294-1322393)
chr7 (399-506)||(43657386-43657493)
chr7 (549-590)||(43657292-43657333)
[»] scaffold0036 (2 HSPs)
scaffold0036 (528-590)||(110036-110098)
scaffold0036 (400-506)||(110133-110239)
[»] chr2 (2 HSPs)
chr2 (528-590)||(14491185-14491247)
chr2 (399-506)||(14491282-14491388)
[»] chr1 (1 HSPs)
chr1 (422-506)||(20148089-20148174)
[»] chr6 (1 HSPs)
chr6 (400-467)||(31278092-31278159)
[»] scaffold1838 (1 HSPs)
scaffold1838 (404-440)||(986-1022)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 2e-97; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 323 - 597
Target Start/End: Complemental strand, 28202019 - 28201753
Alignment:
Q  323 aattgtttaaaagtttcgatttaatcaaaaacctaatatcaccctcgtacgcgcttcaagcaagaacatnnnnnnntacatcatctcttctttagtactt 422  Q
    ||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||||        |||||||||||||||||| |||||    
T  28202019 aattgtttaaaagtttcaatttaatcaaaaatccaatatcatcctcgtacgcgcttcaagcaagaacaccaaagaatacatcatctcttctttaatactt 28201920  T
Q  423 aaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatcaacccaacattcggtacaatattataaaataaaagctgccaacaagaaa 522  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28201919 aaaatattggtgtaagggatcagcttccataagccacaaaccatacaaatcaacccagcattcggtacaatattataaaataaaagctgccaacaagaaa 28201820  T
Q  523 agaattactcaaaagtcatcattctttcattatttttattttagttcttatgcaatgttatgcatgctcttaaaa 597  Q
    ||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| |||||    
T  28201819 agagttactcaaaagtcat--------cattatttttattttagttcttatgcaatgttatgcatgctcctaaaa 28201753  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 28202792 - 28202672
Alignment:
Q  71 atgaacatactaaacttgtaacattgtccttcttttatagataaataaactgacaaaaagataatctatgaagacttaaaggtgtctcgaagatgctctc 170  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  28202792 atgaacatactaaatttgtaacattgtccttcttttatagataaataaactaataaaaagataatctatgaagacttaaaggtgtctggaagatgctctc 28202693  T
Q  171 taatcatctaacaattgttca 191  Q
    ||| |||||| ||| ||||||    
T  28202692 taaccatctagcaactgttca 28202672  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 408 - 596
Target Start/End: Complemental strand, 25674216 - 25674013
Alignment:
Q  408 tcttctttagtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatcaacccaa-cattcggtacaatattataaaataaa 506  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||| |||||||  ||| ||| ||||||||||||||| ||||||    
T  25674216 tcttctttagtacctaaaatgttggtgtaaggggtcaacttccataaaccacaaaccatacaaatcaaatcaaacatacggtacaatattatagaataaa 25674117  T
Q  507 --------------agctgccaacaagaaaagaattactcaaaagtcatcattctttcattatttttattttagttcttatgcaatgttatgcatgctct 592  Q
                  ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||| |||| ||||||     
T  25674116 ttgtacaatacataagctgccaaaaagaaaagaattactcaaaagtcatcattatttcactatttttattttagtttttatacaatgctatgtatgctcc 25674017  T
Q  593 taaa 596  Q
    ||||    
T  25674016 taaa 25674013  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 28202039 - 28201999
Alignment:
Q  218 cttaaaataagcatatttttaattgtttaaaagtttcaatt 258  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28202039 cttaaaataagcatatttttaattgtttaaaagtttcaatt 28201999  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 28197921 - 28197834
Alignment:
Q  70 tatgaacatactaaacttgtaacattgtccttcttttatagataaataaactgacaaaaagataatctatgaagacttaaaggtgtct 157  Q
    ||||| ||||||||||||| | | || ||||||||||||||||||||||| | | ||||||| ||| |  ||||||||||||||||||    
T  28197921 tatgaccatactaaacttgcacctttatccttcttttatagataaataaattaataaaaagagaatgttagaagacttaaaggtgtct 28197834  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 28202876 - 28202827
Alignment:
Q  18 agaatctgtctcttccatagctatttttattcccttgtagagataaaata 67  Q
    |||||| |||||||||||| ||||||||||| |||||||||||| |||||    
T  28202876 agaatccgtctcttccataactatttttattgccttgtagagatgaaata 28202827  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 433
Target Start/End: Original strand, 27056064 - 27056097
Alignment:
Q  400 acatcatctcttctttagtacttaaaatattggt 433  Q
    |||||||||||||||| |||||||||||||||||    
T  27056064 acatcatctcttctttggtacttaaaatattggt 27056097  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 28197996 - 28197955
Alignment:
Q  26 tctcttccatagctatttttattcccttgtagagataaaata 67  Q
    ||||||||||||||||||||||| |||| ||||||| |||||    
T  28197996 tctcttccatagctatttttattgccttatagagatgaaata 28197955  T

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Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 404 - 576
Target Start/End: Original strand, 19665375 - 19665562
Alignment:
Q  404 catctcttctttagtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatcaacccaa-cattcggtacaatattataaaa 502  Q
    ||||||||| |  |||| |||||| |||||||||||||||||||||||||| ||||||||| || ||||||| |||| ||| ||||||||||||||||||    
T  19665375 catctcttcatgtgtacataaaatgttggtgtaaggggtcagcttccataaaccacaaaccgtacaaatcaaaccaaacatacggtacaatattataaaa 19665474  T
Q  503 taaa--------------agctgccaacaagaaaagaattactcaaaagtcatcattctttcattatttttattttagttcttatgca 576  Q
    ||||              ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19665475 taaattgtacgagacataagctgccaaaaagaaaagaattactcaaaagtcatcattctttcaatatttttatttcagttcttatgca 19665562  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 506
Target Start/End: Original strand, 34828106 - 34828240
Alignment:
Q  373 gcgcttcaagcaagaacatnnnnnnntacatcatctcttctttagtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccatataaat 472  Q
    ||||||||||||| |||||       |||| ||| |||| ||| |||| |||||| ||||||||   ||||| ||||||||| ||||||| |||| ||||    
T  34828106 gcgcttcaagcaaaaacatcaaagcatacaccatgtcttttttggtacctaaaatgttggtgtacaaggtcaacttccataaaccacaaatcatacaaat 34828205  T
Q  473 caacccaa-cattcggtacaatattataaaataaa 506  Q
    |||  ||| ||| ||||||||||||||||||||||    
T  34828206 caaatcaaacatacggtacaatattataaaataaa 34828240  T

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Target: scaffold0054 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 422 - 597
Target Start/End: Complemental strand, 32119 - 31928
Alignment:
Q  422 taaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatcaacccaa-cattcggtacaatattataaaataaa-------------- 506  Q
    |||||| |||||||||||| |||| |||||||| |||||||||||||||||||| |||| ||| ||||| ||||||||||||||||                  
T  32119 taaaatgttggtgtaagggatcagtttccataaaccacaaaccatataaatcaaaccaaacatacggtataatattataaaataaattatacaagacata 32020  T
Q  507 --agctgccaacaagaaaagaattactcaaaagtcatcattctttcattatttttattttagttcttatgcaatgttatgcatgctcttaaaa 597  Q
      |||| ||| |||||||| || ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  32019 taagctccca-caagaaaataaatactcaaaagtcatcgttctttgattatttttattttagttcttatgcaatgatatgcatgctcctaaaa 31928  T

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Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 521 - 597
Target Start/End: Original strand, 39044494 - 39044570
Alignment:
Q  521 aaagaattactcaaaagtcatcattctttcattatttttattttagttcttatgcaatgttatgcatgctcttaaaa 597  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  39044494 aaagaaatactcaaaaatcatcattctttcattaattttattttagttcttatgcaatgttatgcatgctcctaaaa 39044570  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 34157851 - 34157918
Alignment:
Q  416 agtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatcaacccaacat 483  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||| ||||| |||| || |||||||    
T  34157851 agtacctaaaatgttggtgtaaggggtcagcttccataaaccacaatccatacaaattaaaccaacat 34157918  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 43277413 - 43277449
Alignment:
Q  404 catctcttctttagtacttaaaatattggtgtaaggg 440  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  43277413 catctcttctttagtacctaaaatattagtgtaaggg 43277449  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 401 - 503
Target Start/End: Complemental strand, 26162397 - 26162294
Alignment:
Q  401 catcatctcttctttagtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccatataaat-caacccaacattcggtacaatattata 499  Q
    ||||||||||||||||| || |||||| |||||||||||||||||||||||||| ||||||| |||| |||| ||| | ||||| | |||||| ||||||    
T  26162397 catcatctcttctttagaacctaaaatgttggtgtaaggggtcagcttccataaaccacaaatcatacaaatccaatcaaacatacagtacaaaattata 26162298  T
Q  500 aaat 503  Q
    ||||    
T  26162297 aaat 26162294  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 408 - 506
Target Start/End: Original strand, 1322294 - 1322393
Alignment:
Q  408 tcttctttagtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatc-aacccaacattcggtacaatattataaaataaa 506  Q
    |||||||| |||| |||||| |||||||||||||||| ||||||||| | |||||||||| ||||| |||| ||||| | ||||||||||||||||||||    
T  1322294 tcttctttggtacctaaaatgttggtgtaaggggtcaacttccataaacaacaaaccatacaaatcaaaccaaacatacagtacaatattataaaataaa 1322393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 399 - 506
Target Start/End: Complemental strand, 43657493 - 43657386
Alignment:
Q  399 tacatcatctcttctttagtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatca-acccaacattcggtacaatatta 497  Q
    ||||||||||||| ||| | || |||||| |||||||||| ||||||||||||||| |||||| ||||| |||| | ||| || || || ||||||||||    
T  43657493 tacatcatctctttttt-gcacctaaaatgttggtgtaagaggtcagcttccataaaccacaatccatacaaattagaccaaagatacgatacaatatta 43657395  T
Q  498 taaaataaa 506  Q
    |||||||||    
T  43657394 taaaataaa 43657386  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 590
Target Start/End: Complemental strand, 43657333 - 43657292
Alignment:
Q  549 tcattatttttattttagttcttatgcaatgttatgcatgct 590  Q
    |||| ||| ||||||||||||||| |||||||||||||||||    
T  43657333 tcatcattcttattttagttcttaagcaatgttatgcatgct 43657292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 590
Target Start/End: Complemental strand, 110098 - 110036
Alignment:
Q  528 tactcaaaagtcatcattctttcattatttttattttagttcttatgcaatgttatgcatgct 590  Q
    ||||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||    
T  110098 tactcaaaaatcatcatcctttcattattcttattatagttcttaagcaatgttatgcatgct 110036  T

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Target: scaffold0036; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 110239 - 110133
Alignment:
Q  400 acatcatctcttctttagtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatca-acccaacattcggtacaatattat 498  Q
    |||||||||||| ||| |||| |||||| ||||||||||||||||||||||  || |||||| ||||| |||| | ||| |||||  || ||||||||||    
T  110239 acatcatctctt-tttggtacctaaaatgttggtgtaaggggtcagcttcctaaaaccacaatccatacaaataagaccaaacatatggcacaatattat 110141  T
Q  499 aaaataaa 506  Q
    ||||||||    
T  110140 aaaataaa 110133  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 590
Target Start/End: Complemental strand, 14491247 - 14491185
Alignment:
Q  528 tactcaaaagtcatcattctttcattatttttattttagttcttatgcaatgttatgcatgct 590  Q
    ||||||||| ||| |||||||||||||||  |||||||||||||| |||||||||||||||||    
T  14491247 tactcaaaaatcaccattctttcattattcatattttagttcttacgcaatgttatgcatgct 14491185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 506
Target Start/End: Complemental strand, 14491388 - 14491282
Alignment:
Q  399 tacatcatctcttctttagtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatca-acccaacattcggtacaatatta 497  Q
    ||||||||||||| ||| |||| |||||| ||| |||||||| ||||||||||||| | |||| ||||| |||| | ||| ||||| | |||||||||||    
T  14491388 tacatcatctctt-tttggtacataaaatgttgttgtaaggg-tcagcttccataaacgacaatccatacaaattagaccaaacatacagtacaatatta 14491291  T
Q  498 taaaataaa 506  Q
    |||||||||    
T  14491290 taaaataaa 14491282  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 506
Target Start/End: Original strand, 20148089 - 20148174
Alignment:
Q  422 taaaatattggtgtaaggggtcagcttccataagccacaaaccatataaatc-aacccaacattcggtacaatattataaaataaa 506  Q
    |||||| || |||| |||||||||||||||||| |||||||||||| ||||| |||| |||||  |||| ||||||||||||||||    
T  20148089 taaaatgttagtgttaggggtcagcttccataaaccacaaaccatacaaatcaaaccaaacatagggtaaaatattataaaataaa 20148174  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 467
Target Start/End: Original strand, 31278092 - 31278159
Alignment:
Q  400 acatcatctcttctttagtacttaaaatattggtgtaaggggtcagcttccataagccacaaaccata 467  Q
    |||||||||||||||| | |||||||||  ||||||||||||||| ||| ||||| ||| ||||||||    
T  31278092 acatcatctcttctttggcacttaaaatgctggtgtaaggggtcaactttcataaaccataaaccata 31278159  T

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Target: scaffold1838 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 1022 - 986
Alignment:
Q  404 catctcttctttagtacttaaaatattggtgtaaggg 440  Q
    |||||||||||| |||||||||||||| |||||||||    
T  1022 catctcttctttggtacttaaaatattagtgtaaggg 986  T

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