View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13303_low_7 (Length: 488)

Name: NF13303_low_7
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13303_low_7
NF13303_low_7
[»] chr8 (2 HSPs)
chr8 (230-403)||(12933811-12933984)
chr8 (343-380)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (230-403)||(28608621-28608794)
chr4 (253-403)||(14177081-14177231)
chr4 (342-395)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (373-410)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (373-410)||(796698-796735)
chr6 (373-410)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (373-410)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 403
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
Q  230 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 328  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  12933984 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 12933885  T
Q  329 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 403  Q
    || ||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933884 ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  343 ggttgctccatataaatctcctcttccaaatctccatg 380  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 403
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
Q  230 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 328  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  28608621 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 28608720  T
Q  329 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 403  Q
    ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608721 ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 403
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  253 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 351  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  352 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 403  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  342 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 395  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  373 tctccatgaagaaatgcagttttcacatccaactgctc 410  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  373 tctccatgaagaaatgcagttttcacatccaactgctc 410  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  373 tctccatgaagaaatgcagttttcacatccaactgctc 410  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  373 tctccatgaagaaatgcagttttcacatccaactgctc 410  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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