View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_low_8 (Length: 478)
Name: NF13303_low_8
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Complemental strand, 40432076 - 40431627
Alignment:
| Q |
19 |
aaatcaccaacatgaatcatatctgcaatcaaaacaatcttcacaaaataaaaataaacatatatgattatcagatatattaaagagcagttgttatagc |
118 |
Q |
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| T |
40432076 |
aaatcaccaacatgaatcatatctgcaatcaaaacaatcttcacaaaataaaaataaacatatatgattatcagatatattgaagagcagttgttatagc |
40431977 |
T |
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| Q |
119 |
ctgagagactgtatataatttaacatcatagatgatcagataaaatttagctatacgggttttcatgtttgaaggatgatttgcaagaaatctttaacat |
218 |
Q |
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| T |
40431976 |
ctgagagactgtatataatttaacatcatagatgatcagataaaatttagctatacgggttttcatgtttgaaggatgatttgcaataaatctttaacat |
40431877 |
T |
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| Q |
219 |
ctgagatattccatttaaaaaaggtgttcatcaacagcatacttacagaacgatgtggagatccacacttctcattgatactatgttcattgtcattttg |
318 |
Q |
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| T |
40431876 |
ctgagatattccatttaaaaaaggtgttcatcaacagcatacttacagaacgatgtggagatccacacttctcattgatactatgttcattgtcattttg |
40431777 |
T |
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| Q |
319 |
ttccgtctcagaaatgggttcaacatctcctgcttcagaattggattgatactcacgcggtgtaacagaatcttccacacgatcttcgatcaactgaaga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40431776 |
ttccgtctcagaaatgggttcaacatctcctgcttcagaattggattgatactcacgcggtgtaacagaatcttccacacgatcttcgatcaactgaaga |
40431677 |
T |
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| Q |
419 |
caaataaaggttcatgtatgtagctagatctctgagagaactgatgatgt |
468 |
Q |
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| T |
40431676 |
caaataaaggttcatgtatgtagctagatctctgagagaactgatgatgt |
40431627 |
T |
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