View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13303_low_9 (Length: 416)
Name: NF13303_low_9
Description: NF13303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13303_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 88 - 400
Target Start/End: Complemental strand, 40847271 - 40846958
Alignment:
| Q |
88 |
aaaggttggtgttaaaggaaggcatgaatgttgtcaaatggttatttataatgaaagtcttcttccaatcggaggaatacatatatagttaattgttttt |
187 |
Q |
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| T |
40847271 |
aaaggttggtgttaaagaaagacatgaatgttgtcaaatggttatttataatgaaagtcttcttccaatcggagaaatacatatatagttaattgttttt |
40847172 |
T |
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| Q |
188 |
ctatgcgtaaagctttatctaagaggttgaagattatggttattaagaactaccacatagatgagtgttttgatttatttatttttataataaatggatt |
287 |
Q |
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| T |
40847171 |
ctatgcgtaaagctttatctaagaggttgaagattatggttattaagaactaccaaatagatgagtgttttgatttatttatttttataataaatggatt |
40847072 |
T |
|
| Q |
288 |
gtaaacttcccaagacatattttgttaaatgtccatcgttttatcaagtaattgtctcatgtttgagaaac-tttatagatgattttaaaagtgaaaaat |
386 |
Q |
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| T |
40847071 |
gtaaacttcccaagacatattttgttaaatttccatcgttttatcaagtaattgtctcatgtttgagaaacttttatagatgattttaaaagtgaaaaat |
40846972 |
T |
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| Q |
387 |
cactgcttgaactt |
400 |
Q |
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| T |
40846971 |
cactgcttgaactt |
40846958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 45 - 400
Target Start/End: Complemental strand, 40843132 - 40842785
Alignment:
| Q |
45 |
acgaagaagtggaaaggtttaatttgagtaccgatatgattgaaaaggttggtgttaaaggaaggcatgaatgttgtcaaatggttatttataatgaaag |
144 |
Q |
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| T |
40843132 |
acgaagaagtggaaaggtttaatttgaataccgacatgattgagaaggttggtgttaaaggaagacatgaatgttgtcaaatggttatctataatgagag |
40843033 |
T |
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| Q |
145 |
tcttcttccaatcggaggaatacatatatagttaattgtttttctatgcgtaaagctttatctaagaggttgaagattatggttattaagaactaccac- |
243 |
Q |
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| T |
40843032 |
ccttcttcc----ggaggaatgcatg----gttaattgttttcctatgcctaaagctttatccaagaggttgaagattatggttattaggaactagtact |
40842941 |
T |
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| Q |
244 |
--atagatgagtgttttgatttatttatttttataataaatggattgtaaacttcccaagacatattttgttaaatgtccatcgttttatcaagtaattg |
341 |
Q |
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| T |
40842940 |
aaatagatgagtgttatgatttatttatttttgtaataaatggattgtaaacttcccatgttatattttgttaaatgtccatcg-tttatcaagtaattg |
40842842 |
T |
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| Q |
342 |
tctcatgtttgagaaactttatagatgattttaaaagtgaaaaatcactgcttgaactt |
400 |
Q |
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| T |
40842841 |
tctcatgtttgagaaactt--tagatgattataaaagtgaaaaatcactgcttgaactt |
40842785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 40847308 - 40847265
Alignment:
| Q |
20 |
agggatatattttatttaaatatagacgaagaagtggaaaggtt |
63 |
Q |
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| T |
40847308 |
agggatatattttatttaaatatagacgaagaagtggaaaggtt |
40847265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 390
Target Start/End: Complemental strand, 4041145 - 4040870
Alignment:
| Q |
98 |
gttaaaggaaggcatgaatgttgtcaaatggttatttataatgaaagtcttcttccaatcggaggaatacatatatagttaattgtttttctatgcgtaa |
197 |
Q |
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|||||||||||| || |||||||||| | |||||||||||||||||| ||||||||||| | |||||| ||| ||| ||| |||| | || || |
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| T |
4041145 |
gttaaaggaaggtataaatgttgtcagacggttatttataatgaaagccttcttccaattgaaggaatgcatg----gttgattattttcattagcatat |
4041050 |
T |
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| Q |
198 |
agctttatctaagaggttgaagattatggttattaagaactaccacatagatgagtgttttgatttatttatttttataataaatggattgtaaacttcc |
297 |
Q |
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| T |
4041049 |
agctttacctaagaggttgaagagtatggatattaggaa--------tagatgagtgttatgatttctttatat--ataataaatggattgtaaactacc |
4040960 |
T |
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| Q |
298 |
caagacatattttgttaaatgtccatcgttttatcaagtaattgtctcatgtttgagaaactttatagatgattttaaaagtgaaaaatcact |
390 |
Q |
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| T |
4040959 |
catgtcatattttgttaaatgtgtatcgttt-attaaataaatagcccatgtttcagaaacttta--gataattttaagagtgaaaaatcact |
4040870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 46503051 - 46503118
Alignment:
| Q |
98 |
gttaaaggaaggcatgaatgttgtcaaatggttatttataatgaaagtcttcttccaatcggaggaat |
165 |
Q |
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| T |
46503051 |
gttaatggaaggcatagatgtagtcaaatggttatttataatgaaagtcttcttccaattggaggaat |
46503118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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