View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13304_low_1 (Length: 879)
Name: NF13304_low_1
Description: NF13304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13304_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 746; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 19 - 848
Target Start/End: Complemental strand, 27643888 - 27643059
Alignment:
| Q |
19 |
cttcttaatgttctcactgtcctcaaatcttctccatcttcctctctcatccatataacactccaaaccggaaccaaacattacatgggtccggttcatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643888 |
cttcttaatgttctcactgtcctcaaatcttctccatcttcctctctcatccatataacactccaaaccggaaccaaacattacatgggtccggttcatg |
27643789 |
T |
|
| Q |
119 |
atccggttcggtccaccaaacttatatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatct |
218 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27643788 |
atccagttctgtccaccaaacttatatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatct |
27643689 |
T |
|
| Q |
219 |
agttacatcctatgccccttcggttacatactcgatacatcgatcctctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagcta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27643688 |
agttacatcctatgccccttcggttacatactcgatacatcgatcatctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagcta |
27643589 |
T |
|
| Q |
319 |
gcagtatatgctgccatatgtcaccatttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27643588 |
gcagtatatgctgccatatgtcaccatttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcg |
27643489 |
T |
|
| Q |
419 |
tgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27643488 |
tgcttgcaaaacaacatgtgtgggctgcagttacagaagatgcgaagaaccaagctttcaattgcacaaatggtgatgttttcacttggaagagtatgtg |
27643389 |
T |
|
| Q |
519 |
gatgttgcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgg |
618 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
27643388 |
gatgttgcttagtgaggtttttaatgttaagtttgtggagttgaatgacaaggaagagtttgatttggtggagttaatgcgtgataagggtgagatttgg |
27643289 |
T |
|
| Q |
619 |
gacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatg |
718 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
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|
| T |
27643288 |
gacctgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacggtgccagttctgcggtttcagtttcaacatg |
27643189 |
T |
|
| Q |
719 |
tatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaact |
818 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
27643188 |
tatctagtatgaacaaaagtaaggattatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagttgagggagatgaaact |
27643089 |
T |
|
| Q |
819 |
catatccttctaccaacgttgaattgcatt |
848 |
Q |
| |
|
|||| || ||||| ||| |||||||||||| |
|
|
| T |
27643088 |
catacccgtctacaaacattgaattgcatt |
27643059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 43 - 835
Target Start/End: Original strand, 50247027 - 50247819
Alignment:
| Q |
43 |
aaatcttctccatcttcctctctcatccatataacactccaaaccggaaccaaacattacatgggtccggttcatgatccggttcggtccaccaaactta |
142 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||||||| | |||| || || ||||| | |||||||| |
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|
| T |
50247027 |
aaatcttctccatcttctcctctcacccatataacggtccaaaccggaactaaacattacatgggtccgatatatgaccccgtccggtctaacaaactta |
50247126 |
T |
|
| Q |
143 |
tatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgccccttcggt |
242 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||| |||| || | |||||| | |
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|
| T |
50247127 |
tatgccacgaaccaccttttaacgagaatatgcctcgactcccttacccaaatttctactacacacttgaggatctcgttgcatcatacacaccttcgat |
50247226 |
T |
|
| Q |
243 |
tacatactcgatacatcgatcctctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatatgtcac |
342 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| || || |||| |||||| ||||| | | |||| |||||| |||||||| ||||||| | |
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|
| T |
50247227 |
tacatactcaatacatcgatcctctctcataattggcgcatcttcaagaagtgcaatcaacgcgatgatgatgctagcgacgtatgctgcgatatgtcgc |
50247326 |
T |
|
| Q |
343 |
catttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtggg |
442 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||| | ||||| || |||| ||||| ||||||||||||| |
|
|
| T |
50247327 |
catgtagggttaccgtttcggtatccaggaaatagatacacttgggagcatttttgtgatatgtcagatgcaggtgtgctggcaaagcaacatgtgtggg |
50247426 |
T |
|
| Q |
443 |
ctgcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttga |
542 |
Q |
| |
|
||| ||||||| | | | ||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50247427 |
ctggagttacaaagaaagctaagaaccaagcatttaattgtacaaacggtgacattttcacttggaagagtatgtggatgttgcttagtgaggtttttga |
50247526 |
T |
|
| Q |
543 |
tgttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatggg |
642 |
Q |
| |
|
|||| ||||||| |||||| |||| || |||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
50247527 |
tgttgagtttgttgagttggatgataaagaagagtttgatatcattgagttgatgcgtgacaagggtgaggtttgggacttgattgtagagaaatatggg |
50247626 |
T |
|
| Q |
643 |
cttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaaga |
742 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| ||||||||| | ||||| || | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50247627 |
cttcataagaccaagttgaaggaaattgcttgctttgaagccatggtgccagttgtacggtttgagtttcaacatgtatctagtatgaacaagagtaaag |
50247726 |
T |
|
| Q |
743 |
actatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaac |
835 |
Q |
| |
|
| |||||||| || |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
50247727 |
attatgggtttttagagtatgctgatacgtttaagagtatcaaactctgggtggctaagctgagggagatgaaacttataccctcctaccaac |
50247819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 841
Target Start/End: Original strand, 50254140 - 50254962
Alignment:
| Q |
19 |
cttcttaatgttctcactgtcctcaaatcttctccatcttcctctctcatccatataacactccaaaccggaaccaaacattacatgggtccggttcatg |
118 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||| ||||| |||||| |||||||||| | ||||| ||||||||||| ||| ||||||| || |||| |
|
|
| T |
50254140 |
cttcttaacgttctcactgtcctaaaatcttatccgtcttcgcctctcacccatataacagtacaaacaggaaccaaacactacttgggtccagtgcatg |
50254239 |
T |
|
| Q |
119 |
atccggttcggtccaccaaacttatatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatct |
218 |
Q |
| |
|
| ||||||| ||| ||||||||||| ||||||||||||||||| | ||||||||||| |||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
50254240 |
acccggttcagtctaccaaacttatctgccacgaaccacctttcgaagagaatatgcctcgactctcttatccaaatttctattacgcgcttgaggatct |
50254339 |
T |
|
| Q |
219 |
agttacatcctatgccccttcggttacatactcgatacatcgatcctctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagcta |
318 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||| |||||||| |||||||||||||||||| || ||||| |||||| ||||| |||| ||| ||| |
|
|
| T |
50254340 |
cgttaaatcctatgcaccttcaattacatactcaatacatcgttcctctatcataataggtgcttcgccaagaagtgcatacaacatgctgatggtacta |
50254439 |
T |
|
| Q |
319 |
gcagtatatgctgccatatgtcaccatttagggttaccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggca |
418 |
Q |
| |
|
|| ||| ||||||||||||| ||| |||| ||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50254440 |
gcgacatacgctgccatatgtcgccaggtaggattaccgtttcgttttccaggaaataggtacacttgggagcatttctgtgatatgacggatgctcgtg |
50254539 |
T |
|
| Q |
419 |
tgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtg |
518 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||| | | | |||||||||||||| ||||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
50254540 |
tgctggcaaagcaacatgtatgggctgcagttacaaagaaggctaagaaccaagcgtttaattgcacaaatggtgacgttttcgcatggaagagtatgtg |
50254639 |
T |
|
| Q |
519 |
gatgttgcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgg |
618 |
Q |
| |
|
|| | ||||| || || ||||| ||||||||||||||| ||| |||| ||||||||||||||||||| | |||| |||||||||||||||||| ||||| |
|
|
| T |
50254640 |
gaaggtgctttgtaagacttttgctgttaagtttgtggatttggatgaaaaggaagagtttgatttggtgcagtttatgcgtgataagggtgaggtttgg |
50254739 |
T |
|
| Q |
619 |
gacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatg |
718 |
Q |
| |
|
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| || ||||| || | || ||||||||||||| || |
|
|
| T |
50254740 |
gatcagattgtggaggagtatggacttcataagaccaaattggaggaaattgcttgttttgatgccttggtgccagtttttcgatttgagtttcaacttg |
50254839 |
T |
|
| Q |
719 |
tatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaact |
818 |
Q |
| |
|
||||||||||||| |||||||| || |||| ||| ||||||||||| || |||||||| ||| | | |||||||||| ||||||||||||||||| || |
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|
| T |
50254840 |
tatctagtatgaataagagtaaaaattatgagttttttgagtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatct |
50254939 |
T |
|
| Q |
819 |
catatccttctaccaacgttgaa |
841 |
Q |
| |
|
|||| || ||||| ||| ||||| |
|
|
| T |
50254940 |
catacccatctacgaacattgaa |
50254962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 785 - 870
Target Start/End: Complemental strand, 27646328 - 27646243
Alignment:
| Q |
785 |
gattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcattatctgtaataatattcttcgac |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
27646328 |
gattctgggtggctaagctgagggagatgaaactcatacccttctaccaacattgaattgcattatctgtaataatattgttcgac |
27646243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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