View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13304_low_2 (Length: 771)
Name: NF13304_low_2
Description: NF13304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13304_low_2 |
 | |
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| [»] scaffold0360 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 645; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 10 - 753
Target Start/End: Complemental strand, 5885816 - 5885066
Alignment:
| Q |
10 |
catcatcaagcagccaaacagttaattacaaaccctagtattcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttattttatttgt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5885816 |
catcatcaagcagccaaacagttaattacaaaccctagtagtcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttattttatttgt |
5885717 |
T |
|
| Q |
110 |
tacatgcatttaattatctaatgttannnnnnnctcaagagggtgtggatttcattttgtttgttaagtgatgcttgttgaagttcaataaaatacaatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5885716 |
tacatgcatttaattatctaatgttatttttttctcaagagggtgtggatttcattttgtttgttaagtgatgctttttgaagttcaataaaatacaatg |
5885617 |
T |
|
| Q |
210 |
taatgtacgtttaggttcatttaatttacatgcatgcatgtacgtttgtcacctaaaagtatctatttgcctnnnnnnn----actgagaaaagccgcat |
305 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5885616 |
taatgtacgtttaggttcacttaatttacatgcatgcatgtacgtttgtcacctaaaagtatctatttgcctcccccccccccactgagaaaagccgcat |
5885517 |
T |
|
| Q |
306 |
aaaagacagaagtcgtacgtatacaaacaacacgacggagaggccagcatgcatacatatactctatgatttaagttatgtacttgttgaagcatgcacc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5885516 |
aaaagacagaagtcgtacgtatacaaacaacaccacggagaggccagcatgcatacatatactctatgatttaagttatgtacttgttgaagcatgcacc |
5885417 |
T |
|
| Q |
406 |
aat-tataagaataactaagaatactattttgcaatcgaaaataaacttttttaattaatatttcctttttctaaatggcaaaaattatattacagaact |
504 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5885416 |
aatctataagaataactaagaatactattttgcaatcgaagataaacttttttaattaatatttcctttttctaaatggcaaaaattatattatagaact |
5885317 |
T |
|
| Q |
505 |
agacaaaatacc--tgataatatatatatggaatggatcacttgtttgtttaattaaatagacctaacataatatttaacatgatacaattgaaagtaaa |
602 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
5885316 |
agacaaaatacccctgataatatatatatggaatggatcacttgtttgtttaattaaatagacctaacataatatttaacatgatacaatcgaaagtaaa |
5885217 |
T |
|
| Q |
603 |
caacataaatatttagtcacaaacatttgtccagtgtatgattttaaaataaactttaaattaaaatattatattgttcttaactttatttagaatatat |
702 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5885216 |
caacataaatatttagtcacaaacatttgtccagtgtatgattttaaaataaactttaaattaaaatattatattgttcttaactttatttagaatatat |
5885117 |
T |
|
| Q |
703 |
acaaaatactaaatttaacaaattgattagtgacaataaaacatttatcat |
753 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5885116 |
acaaaatactaaatttaacaaattgattagtgacaataaaacatttatcat |
5885066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 356 - 514
Target Start/End: Complemental strand, 5840285 - 5840121
Alignment:
| Q |
356 |
gcatacatatactctatgatttaagttatgtacttgtt----gaagcatgcaccaat-tataagaataactaagaatactattttgcaatcgaaaataaa |
450 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5840285 |
gcatgcatatactctatgatttaagttatttacttgtttgttgaagcatgcaccaatctataagaataactaagaatactattttgcaatcgaagataaa |
5840186 |
T |
|
| Q |
451 |
ctttttt-aattaatatttcctttttctaaatggcaaaaattatattacagaactagacaaaata |
514 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |||||||| |||||||| ||||||| |
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|
| T |
5840185 |
ctttttttaattaatatttcttttttctaaatggcaaaagttatattagagaactaggcaaaata |
5840121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 5841286 - 5841178
Alignment:
| Q |
173 |
ttaagtgatgcttgttgaagttcaataaaatacaatgtaatgtacgtttaggttcatttaatttacatgcatgcatgtacgtttgtcacctaaaagtatc |
272 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
5841286 |
ttaagtgatgtttgttgaagttcaataaaataccatgtaatgtacgtttatgttcatttaattgacatgcatgcatgtacgtttgtcacctaaaagtatc |
5841187 |
T |
|
| Q |
273 |
tatttgcct |
281 |
Q |
| |
|
||||||||| |
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|
| T |
5841186 |
tatttgcct |
5841178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 5847439 - 5847331
Alignment:
| Q |
173 |
ttaagtgatgcttgttgaagttcaataaaatacaatgtaatgtacgtttaggttcatttaatttacatgcatgcatgtacgtttgtcacctaaaagtatc |
272 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
5847439 |
ttaagtgatgtttgttgaagttcaataaaatactatgtaatgtacgtttaggttcatttaatttacatgtatgcatgtacgtttgtcacctaaaattatc |
5847340 |
T |
|
| Q |
273 |
tatttgcct |
281 |
Q |
| |
|
||||||||| |
|
|
| T |
5847339 |
tatttgcct |
5847331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 5847651 - 5847525
Alignment:
| Q |
10 |
catcatcaagcagccaaacagttaattacaa-----accctagtattcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttatttta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||| |
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|
| T |
5847651 |
catcatcaagcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatcttttatttta |
5847552 |
T |
|
| Q |
105 |
tttgttacatgcatttaattatctaat |
131 |
Q |
| |
|
||||||| ||||||||||||||||||| |
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|
| T |
5847551 |
tttgttatatgcatttaattatctaat |
5847525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 5841497 - 5841374
Alignment:
| Q |
10 |
catcatcaagcagccaaacagttaattacaa-----accctagtattcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttatttta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||| |
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|
| T |
5841497 |
catcatcaagcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatcttttatttta |
5841398 |
T |
|
| Q |
105 |
tttgttacatgcatttaattatct |
128 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
5841397 |
tttgttatatgcatttaattatct |
5841374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 5848207 - 5848084
Alignment:
| Q |
10 |
catcatcaagcagccaaacagttaattacaa-----accctagtattcctttaggatggaagccatagttttgtcaagagtgtgtagatctgttatttta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||| |
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|
| T |
5848207 |
catcatcaagcagccaaacagttaattacaatacaaaccctagtattcctttaggatggcagccatagttatgtcaagagtatgtagatcttttatttta |
5848108 |
T |
|
| Q |
105 |
tttgttacatgcatttaattatct |
128 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
5848107 |
tttgttatatgcatttaattatct |
5848084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 526 - 675
Target Start/End: Complemental strand, 5840070 - 5839926
Alignment:
| Q |
526 |
atatatggaatggatcacttgtttgtttaattaaatagacctaacataatatttaacatgatacaattgaaagtaaacaacataaatatttagtcacaaa |
625 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||||||||||| |||||| | |||||| ||||| ||| | |||||||| ||||||| || |
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|
| T |
5840070 |
atatatggaatggataatatgtttgtttaattaaattgacctaacataatgtttaac-tcatacaactgaaattaagctacataaat--ttagtca--aa |
5839976 |
T |
|
| Q |
626 |
catttgtccagtgtatgattttaaaataaactttaaattaaaatattata |
675 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
5839975 |
catttgtcatgtgtatgatttttaaataaactttaaatttaaatattata |
5839926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0360 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: scaffold0360
Description:
Target: scaffold0360; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 356 - 517
Target Start/End: Original strand, 4920 - 5088
Alignment:
| Q |
356 |
gcatacatatactctatgatttaagttatgtacttgtt----gaagcat-gcaccaat-tataagaataactaagaatactattttgcaatcgaaaataa |
449 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4920 |
gcatgcatatactctatgatttaagttatttacttgtttgttgaagcattgcaccaatctataagaataactaagaatactattttgcaatcgaagatat |
5019 |
T |
|
| Q |
450 |
actttt-ttaattaatatttcctttttctaaatggcaaaaattatattacagaactagacaaaatacct |
517 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||| |
|
|
| T |
5020 |
actttttttaattaatatttcctttttctaaatggaaaaagttatattagagaactaggcaaaatacct |
5088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0360; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 526 - 675
Target Start/End: Original strand, 5139 - 5283
Alignment:
| Q |
526 |
atatatggaatggatcacttgtttgtttaattaaatagacctaacataatatttaacatgatacaattgaaagtaaacaacataaatatttagtcacaaa |
625 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||||||||||| |||||| | |||||| ||||| ||| | |||||| | ||||||| || |
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|
| T |
5139 |
atatatggaatggataatatgtttgtttaattaaattgacctaacataatgtttaac-tcatacaactgaaattaagctacataatt--ttagtca--aa |
5233 |
T |
|
| Q |
626 |
catttgtccagtgtatgattttaaaataaactttaaattaaaatattata |
675 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5234 |
catttgtcatgtgtatgattttaaaataaactttaaatttaaatattata |
5283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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