View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13304_low_4 (Length: 433)
Name: NF13304_low_4
Description: NF13304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13304_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 24259979 - 24260383
Alignment:
| Q |
1 |
tttctcaataatgttttgctgttgagttcattatattttttcaacagtttcttgtgttgattaattt-ttgttttgatatgttacagagataaaagacaa |
99 |
Q |
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| T |
24259979 |
tttctcaataatgttttgctgttgagttcattatattttttcaacagtttcttgtgttgattaatttcttgttttgatatgatacagagataaaagacaa |
24260078 |
T |
|
| Q |
100 |
agtgatcaagagcaatgaagattttgtttggtcaattgaggttccactgtctggaaaattcatcattgatgttgatttccttgatttgaagattgcaggc |
199 |
Q |
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| T |
24260079 |
agtgatcaagagcaatgaagattttgtttggtcaattgaggttccactgtctggaaaattcatcattgatgttgatttccttgatttgaagattgcaggc |
24260178 |
T |
|
| Q |
200 |
ccagatgtatatgctcaagacttatcttttattattattgattttctatgatattcactgcaaatgataatcatttagatacaattagaatgtgacagta |
299 |
Q |
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| T |
24260179 |
ccagatgtatatgctcaagacttatcttttattattattgattttctattatattcactgcaaatgataatcatttagatacaattagaatgtgacagta |
24260278 |
T |
|
| Q |
300 |
tagctaaaatcaattttggggtagtaattggatttagtaatccccttttataatcatgagcatttaattaatt-ctatgttcataatcaccaatgatgaa |
398 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
24260279 |
tagctaaaatcaattttgggg-------------tagtaatccccttttataatcatgagcatttaattaattcctttgttcataatcaccaatgatgaa |
24260365 |
T |
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| Q |
399 |
tcagaatgattagtgata |
416 |
Q |
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|||||||||||||||||| |
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| T |
24260366 |
tcagaatgattagtgata |
24260383 |
T |
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