View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13304_low_5 (Length: 309)
Name: NF13304_low_5
Description: NF13304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13304_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 74 - 292
Target Start/End: Complemental strand, 31719318 - 31719100
Alignment:
| Q |
74 |
taaaatgtggaacttggaaacttattttgtcttgctaagtttattattagattctaagatgctttgttgtacactccttgttttgcagatggaacttata |
173 |
Q |
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| T |
31719318 |
taaaatgtggaacttggaaacttattttgtcttgctaagtttattattagattctaagatgctttgttgtacactccttgttttgcagatggaacttata |
31719219 |
T |
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| Q |
174 |
tctaaagttcgtaatccattcattgtagagtataaagattcctgggtagaaaaggttagccttttataaaacaaaatcattttatttgctttaactcttt |
273 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719218 |
tctaaagttcgtaatccgttcattgtagagtataaagattcctgggtagaaaaggttagccttttataaaacaaaatcattttatttgctttaactcttt |
31719119 |
T |
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| Q |
274 |
gttgttttgttgtgttctt |
292 |
Q |
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||||||||||||||||||| |
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| T |
31719118 |
gttgttttgttgtgttctt |
31719100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31719416 - 31719333
Alignment:
| Q |
1 |
tatttttagtcaaaatgtgacattggaactttatgttaannnnnnnataatttctatttattgctaaataatgtaaaatgtggaa |
85 |
Q |
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| T |
31719416 |
tatttttagtcaaaatgtgacattggaactttatgttaatttttt-ataatttctatttattgctaaataatgtaaaatgtggaa |
31719333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 36069892 - 36069823
Alignment:
| Q |
160 |
agatggaacttatatctaaagttcgtaatccattcattgtagagtataaagattcctgggtagaaaaggt |
229 |
Q |
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| T |
36069892 |
agatggagcttatctctaaattacgaaacccattcattgtggagtataaagattcatgggtagaaaaggt |
36069823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 38242062 - 38242144
Alignment:
| Q |
154 |
ttttgcagatggaacttatatctaaagttcgtaatccattcattgtagagtataaagattcctgggtagaaaaggttagcctt |
236 |
Q |
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||||||||||||| ||||||||||||||||| ||||| || ||||| |||||||||||||| |||||||||||||| |||||| |
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| T |
38242062 |
ttttgcagatggagcttatatctaaagttcgcaatccctttattgtggagtataaagattcttgggtagaaaaggtcagcctt |
38242144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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