View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13304_low_6 (Length: 291)
Name: NF13304_low_6
Description: NF13304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13304_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 30261291 - 30261028
Alignment:
| Q |
16 |
aatgacaaactttatgatttttatgtcaccttttcgagctcatccattaaaacacggcacattccaagtcgtctgtactgaaatctggtacctacgaggg |
115 |
Q |
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| T |
30261291 |
aatgacaaactttatgatttttatgtcaccttttcgagctcatccattaaaacgcggcacattccaagtcgtctgtactgaaatctggtacctacgaggg |
30261192 |
T |
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| Q |
116 |
gcacttctgctatcttctgtccaaatatcctaaaacatgaaatgccaagttatggaaacttgaaatgcaatcactgaatcatgcataatctgttattgta |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30261191 |
gcacttctgctatcttctctccaaatatcctaaaacatgaaatgccaagttacggaaacttgaaatgcaatcactgaatcatgcataatctgttattgta |
30261092 |
T |
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| Q |
216 |
tttgattcttagtagtagcagatcctatactcacctcacagtcgccacactaatcaattcttcat |
280 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30261091 |
ttt-attcttagtagtagcagatcctatactcacctcacagtcgccacactaatcaattcttcat |
30261028 |
T |
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