View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13304_low_7 (Length: 253)

Name: NF13304_low_7
Description: NF13304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13304_low_7
NF13304_low_7
[»] chr7 (4 HSPs)
chr7 (151-253)||(1553167-1553268)
chr7 (158-250)||(1537580-1537677)
chr7 (104-147)||(1545570-1545613)
chr7 (102-147)||(12469043-12469088)
[»] chr3 (3 HSPs)
chr3 (25-104)||(9103180-9103259)
chr3 (102-147)||(53589050-53589096)
chr3 (102-146)||(45279860-45279904)
[»] chr5 (1 HSPs)
chr5 (27-107)||(40687341-40687421)
[»] chr6 (2 HSPs)
chr6 (25-91)||(32450575-32450641)
chr6 (102-147)||(17352817-17352862)
[»] chr4 (2 HSPs)
chr4 (102-147)||(16647168-16647213)
chr4 (102-147)||(24924987-24925032)
[»] chr8 (3 HSPs)
chr8 (102-147)||(22454653-22454698)
chr8 (102-147)||(32352298-32352343)
chr8 (102-147)||(32368959-32369004)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 151 - 253
Target Start/End: Original strand, 1553167 - 1553268
Alignment:
Q  151 ttcaacctacctaaatttattatcttttttgagttcaatgcattttacttaatttcattgtcataatcattcataattattttatataagtgtaatgtac 250  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1553167 ttcaacctacctgaatttattatcctttt-gagttcaatgcattttacttaatttcattgtcataatcattcataattattttatataagtgtaatggac 1553265  T
Q  251 act 253  Q
    |||    
T  1553266 act 1553268  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 1537677 - 1537580
Alignment:
Q  158 tacctaaatttattatcttttttgagttcaatgcattttactta----atttcattgtcataatcattcataatta-ttttatataagtgtaatgtac 250  Q
    ||||| ||||||||||  ||||||||||||||||||||||| ||    |||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  1537677 tacctgaatttattataatttttgagttcaatgcattttacatatacaatttcattgtcataataattcataattatttttatataagtgtaatgtac 1537580  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 1545570 - 1545613
Alignment:
Q  104 atagtagtttttcattaggataaagggtcgcaaatcacttatag 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1545570 atagtagtttttcattaggataaagggtcgcaaatcacttatag 1545613  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 12469088 - 12469043
Alignment:
Q  102 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 147  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||    
T  12469088 atatagtagtttttcataaggaaaatgggtcgcaaatcacttatag 12469043  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 9103180 - 9103259
Alignment:
Q  25 cttgcagcagaattttcctaagaccataagcaaatatccatgccctatttcttttacagcacgttaggtatgtcaagata 104  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||||||||    
T  9103180 cttgcagcagaattttcctaagaccagaagcaaatctccatgccctgtttcttttacagcacgttgggtatgtcaagata 9103259  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 53589050 - 53589096
Alignment:
Q  102 atatagtagtttttcattagg-ataaagggtcgcaaatcacttatag 147  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||    
T  53589050 atatagtagtttttcattaggaaaaaatggtcgcaaatcacttatag 53589096  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 45279860 - 45279904
Alignment:
Q  102 atatagtagtttttcattaggataaagggtcgcaaatcacttata 146  Q
    ||||||||||||||||| || | |||||||| |||||||||||||    
T  45279860 atatagtagtttttcataagaaaaaagggtcacaaatcacttata 45279904  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 40687341 - 40687421
Alignment:
Q  27 tgcagcagaattttcctaagaccataagcaaatatccatgccctatttcttttacagcacgttaggtatgtcaagatatag 107  Q
    |||| ||||||||||||||||||| |||||||| ||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  40687341 tgcatcagaattttcctaagaccagaagcaaatctccgtgccctattccttttacatcacgttaggtatgtcaagatatag 40687421  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 32450641 - 32450575
Alignment:
Q  25 cttgcagcagaattttcctaagaccataagcaaatatccatgccctatttcttttacagcacgttag 91  Q
    ||||||| ||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||    
T  32450641 cttgcagtagaattttcctaagatcagaagcaaatctccatgccctgtttcttttacagcacgttag 32450575  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 17352862 - 17352817
Alignment:
Q  102 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 147  Q
    ||||||||||||| | | |||| |||||||||||||||||||||||    
T  17352862 atatagtagttttccctaaggaaaaagggtcgcaaatcacttatag 17352817  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 16647213 - 16647168
Alignment:
Q  102 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 147  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  16647213 atatagtagtttttcataagaaaaaagggtcgcaaatcacttatag 16647168  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 24925032 - 24924987
Alignment:
Q  102 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 147  Q
    |||||||||||||||||| | | ||||| |||||||||||||||||    
T  24925032 atatagtagtttttcatttgaaaaaaggttcgcaaatcacttatag 24924987  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 22454653 - 22454698
Alignment:
Q  102 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 147  Q
    ||||||||||||||||| || | || ||||||||||||||||||||    
T  22454653 atatagtagtttttcataagaaaaatgggtcgcaaatcacttatag 22454698  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 32352343 - 32352298
Alignment:
Q  102 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 147  Q
    ||||||||||||||||| || | || ||||||||||||||||||||    
T  32352343 atatagtagtttttcataagaaaaacgggtcgcaaatcacttatag 32352298  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 32369004 - 32368959
Alignment:
Q  102 atatagtagtttttcattaggataaagggtcgcaaatcacttatag 147  Q
    ||||||||||||||||| || | || ||||||||||||||||||||    
T  32369004 atatagtagtttttcataagaaaaacgggtcgcaaatcacttatag 32368959  T

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