View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13305_high_11 (Length: 353)
Name: NF13305_high_11
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 11169882 - 11170214
Alignment:
| Q |
6 |
gacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11169882 |
gacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaag |
11169981 |
T |
|
| Q |
106 |
ttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattggtag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11169982 |
ttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattggtag |
11170081 |
T |
|
| Q |
206 |
gaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170082 |
gaatcgtggtattcctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaa |
11170181 |
T |
|
| Q |
306 |
cttttcacaaatcacaccacttgctataaaagc |
338 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
11170182 |
cttttcacaaatcgcaccacttgctataaaagc |
11170214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 11208704 - 11209036
Alignment:
| Q |
6 |
gacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaag |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
11208704 |
gacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctagcaag |
11208803 |
T |
|
| Q |
106 |
ttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctattggta |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||| || | |||| ||| ||||| |||| |||||| || | |||| |||||||| |
|
|
| T |
11208804 |
ttgttgtccttagttgtttgcctctcaccctcataaacggaaattgata-aactattttggttgggttcactggtggtgtatacatcttccatattggta |
11208902 |
T |
|
| Q |
205 |
ggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11208903 |
ggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatcttgaa |
11209002 |
T |
|
| Q |
305 |
acttttcacaaatcacaccacttgctataaaagc |
338 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
11209003 |
acttttcacaaatctcaccacttgctataaaagc |
11209036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 11275272 - 11275586
Alignment:
| Q |
12 |
taagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttg |
111 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| || || ||||| || ||||| |||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
11275272 |
taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg |
11275371 |
T |
|
| Q |
112 |
tccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgactt-ttccctattggtaggaatc |
210 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| | ||| | || || |||| |||| | || |||||||||| |||| |||| | |||||||||||| |
|
|
| T |
11275372 |
tccttagttgttttcctctcaccctcataaatactaattgcaacaaatttttggttaggtatagttgtggtgaat-acttcttccttgttggtaggaatc |
11275470 |
T |
|
| Q |
211 |
gtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaactttt |
310 |
Q |
| |
|
|||||||||| |||| |||| |||||| ||| || | |||||||||| |||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
11275471 |
atggtattcctgggaaatattgttttcatgattccccattgtgttttaattccaatggacaatggattaacttccctcaatgtcaaatcttgaaactttt |
11275570 |
T |
|
| Q |
311 |
cacaaatcacaccact |
326 |
Q |
| |
|
|||||| | ||||||| |
|
|
| T |
11275571 |
cacaaagctcaccact |
11275586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 11196117 - 11196189
Alignment:
| Q |
73 |
ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat |
145 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
11196117 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat |
11196189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 11319866 - 11319818
Alignment:
| Q |
278 |
tgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccact |
326 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
11319866 |
tgacttccctcaatgtcaaatcttgaaacttttcacaaaactcaccact |
11319818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 11155697 - 11155746
Alignment:
| Q |
100 |
agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat |
149 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||||| |||||||||||||| |
|
|
| T |
11155697 |
agcaagttgttttccctagttattttcctctcaccttcataaacatgaat |
11155746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 11132411 - 11132471
Alignment:
| Q |
96 |
tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaata |
156 |
Q |
| |
|
||||||||||||||| || ||||||||| || |||||||| |||||||||||| ||||| |
|
|
| T |
11132411 |
tcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaata |
11132471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University