View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_high_12 (Length: 315)
Name: NF13305_high_12
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 28 - 299
Target Start/End: Complemental strand, 6516799 - 6516527
Alignment:
| Q |
28 |
gtcccacttgcagtattttatggtacaaaaccagtgataannnnnnnnn-agttgaatttcgtttccnnnnnnngtcactaacatgacagttttaaattt |
126 |
Q |
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| T |
6516799 |
gtcccacttgcagtattttatggtacaaaaccagtgataattttttttttagttgaatttcgtttcctttttttgtcactaacatgacagttttaaattt |
6516700 |
T |
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| Q |
127 |
aattctgcccgggaaacacgtgttgaaggtgatcctgaacttcttgacgattctgaagtagaaatattatttctgctgattatttttattatataatatt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6516699 |
aattctgcccgggaaacacgtgttgaaggtgatcctgaacttcttgacgattctgaagtaaaaatattatttctgctgattatttttattatataatatt |
6516600 |
T |
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| Q |
227 |
tacactgatacatataaatgttttggcatttaggggtcctataggtttaatgttgcatgcagaaccatctttc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6516599 |
tacactgatacatataaatgttttggcatttaggggtcctataggtttaatgttgcatgcagaaccatctttc |
6516527 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 27254752 - 27254828
Alignment:
| Q |
107 |
aacatgacagttttaaatttaattctgcccgggaaacacgtgttgaaggtgatcctgaacttcttgacgattctgaa |
183 |
Q |
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| T |
27254752 |
aacatcacagttttgaatttaattgtgcccaggaaacacatgcggacggtgatcctgaacttctggacgattctgaa |
27254828 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 1745996 - 1746072
Alignment:
| Q |
107 |
aacatgacagttttaaatttaattctgcccgggaaacacgtgttgaaggtgatcctgaacttcttgacgattctgaa |
183 |
Q |
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||||| |||| ||| ||||||||| ||| | |||||||| || ||| ||||||||||||||||| |||||||||||| |
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| T |
1745996 |
aacatcacagctttgaatttaattgtgctcaggaaacacatgctgacggtgatcctgaacttctggacgattctgaa |
1746072 |
T |
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