View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_high_13 (Length: 300)
Name: NF13305_high_13
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 7859611 - 7859740
Alignment:
| Q |
156 |
gatgagtcactcactaaaatgaaattaatcattatgcatgtaaagtaattttacatgaattcaattagtatattcaaatacgaatattttacacgtacat |
255 |
Q |
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| T |
7859611 |
gatgagtcactcactaaaatgaaattaatcattatgcatgtaaagtaattttacatgaattcaattagtatattcaaatacgaatattttacacgtacat |
7859710 |
T |
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| Q |
256 |
ccaataatgtgttgacacaacaattaatga |
285 |
Q |
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| T |
7859711 |
ccaataatgtgttgacacaacaattaatga |
7859740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 7859472 - 7859548
Alignment:
| Q |
18 |
actttgctcattggaactgctcccacctgccttggagtctttcatcataacatataagcttggaacttaatttatgc |
94 |
Q |
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| T |
7859472 |
actttgctcgttggaactgctcccacctgccttggagtctttcatcctaacatataagcttggaacttaatttatgc |
7859548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 34226937 - 34226901
Alignment:
| Q |
238 |
aatattttacacgtacatccaataatgtgttgacaca |
274 |
Q |
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| T |
34226937 |
aatattttacacatacatccaatgatgtgttgacaca |
34226901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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