View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_high_15 (Length: 276)
Name: NF13305_high_15
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 12830241 - 12829991
Alignment:
| Q |
20 |
actattccacccatggccctccaaatcatccaaaagattagctagaagttgttcctcccagacaaaaaagcgatgacgccaagagaaaatccactccctc |
119 |
Q |
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| T |
12830241 |
actattccacccatggccctccaaatcatccaaaagattagctagaagttgttcctcccagacaaaaaagcgatgacgccaagagaaaatccactccctc |
12830142 |
T |
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| Q |
120 |
acgaaccgttccacacccaaatatccgccaccattgcctctttttggtttaacattgctaataatcttggatatttatcaccgaaggcaacaccacccct |
219 |
Q |
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| T |
12830141 |
acgaaccgttccacacccaaatatccgccaccattgcctctttttggtttaacattgcgaataatcttggatatttatcacggaaggcaacaccacccct |
12830042 |
T |
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| Q |
220 |
ccacctacaatatcaaagcttggtattttcaccattttcgagtattatcta |
270 |
Q |
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| T |
12830041 |
ccacctacaataccaaagcttggtattttcaccattttcgagtatcatcta |
12829991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 32742501 - 32742545
Alignment:
| Q |
133 |
cacccaaatatccgccaccattgcctctttttggtttaacattgc |
177 |
Q |
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| T |
32742501 |
cacccaaacatccgccacctttgcctctttttggtttgacattgc |
32742545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 6494925 - 6494782
Alignment:
| Q |
31 |
catggccctccaaatcatccaaaagattagctagaagttgttcctcccagacaaaaaagcgatgacgccaagagaaaatccactccctcacgaaccgttc |
130 |
Q |
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| T |
6494925 |
catgaccctccaaatcttccaacaaatttgtgagaagttgttcctcccaaacaaaaaaccgccgacgccaagaaaacctccactccctaacaacacgttc |
6494826 |
T |
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| Q |
131 |
cacacccaaatatccgccaccattgcctctttttggtttaacat |
174 |
Q |
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| T |
6494825 |
aacacccaaatatccgccaccatagcttctttttgatttgacat |
6494782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 44514050 - 44514184
Alignment:
| Q |
62 |
tagaagttgttcctcccagacaaaaaagcgatgacgccaagagaaaatccactccctcacga-accgttccacacccaaatatccgccaccattgcctct |
160 |
Q |
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|||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||||| | | ||| || |||||||||| ||||| ||| ||||||| |
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| T |
44514050 |
tagaagttcttcctcccaaacaaaaaagcggcgacgccaagagaatctccactccctctctacaccattagacacccaaatctccgctaccgttgcctcc |
44514149 |
T |
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| Q |
161 |
ttttggtttaacattgctaataatcttggatattt |
195 |
Q |
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| T |
44514150 |
ttttggttagacatagcaaataatctcggaaattt |
44514184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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