View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_high_2 (Length: 769)
Name: NF13305_high_2
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 192 - 753
Target Start/End: Original strand, 4656644 - 4657203
Alignment:
| Q |
192 |
taaaatctgaataagacgcaagagaaacttacagggtagaaaaaataacaatcttatccaatagtttggttcgtgttttggatagagaaccaatnnnnnn |
291 |
Q |
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| T |
4656644 |
taaaatctggataagatgcaagaaaaacttatagggtagaaaaaataacaatcttatcccgtagtttggttcgtgttttggatagagaaccaa---aaaa |
4656740 |
T |
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| Q |
292 |
nntggtggatttgatttggttcggtttttcaaannnnnnncttatcaaacatattaaacaaaacagattaaaaatgaatttgcactaaatcggtctttat |
391 |
Q |
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| T |
4656741 |
aatgatggatttgacttggttcggtttttcaattttttttcttatcagatatattaaaccaaacagattaaaaatgaatttgcactaaatcggtctttag |
4656840 |
T |
|
| Q |
392 |
agtagtttattttggatttgacttctctcttagtaatgtgagaaaaaacaattgatattataagcacacataatttgtatttcatgctcatataatatca |
491 |
Q |
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| T |
4656841 |
agtagtttattttggatttgacttctctcttagtaatgtgagaaaaaacaattgatattataagcacacataatttgtatttcatgctcatataatatca |
4656940 |
T |
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| Q |
492 |
ttgattgatttgtttataaaatcttttcaataatagatgttagttgttagattaata-tttattcataatccaaatttagatacaagactttcagctctg |
590 |
Q |
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| T |
4656941 |
ttgattgatttgtttataaaatcttttcaataatagatgttagttgttaaattaatattttactcatagtccaactttaaatacaagactttcagctctg |
4657040 |
T |
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| Q |
591 |
tatcttttagtttaaaccaattgaattactcaactttccttacttacaaatggttgatattatttgttatatattgtagctctgtcgattttttctccta |
690 |
Q |
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| T |
4657041 |
tatcttttagtttaaaccaattgaattactcaactttccttacttacaaatggttgatattatttgctatatattgtagctctgtcgattttttctccta |
4657140 |
T |
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| Q |
691 |
ctctaactaatgcttccttcaagccaaataagaatctattgtttcctttgtgatgtgcttctt |
753 |
Q |
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| T |
4657141 |
ctctaactaatgcttccttcaagccaaataagaatctattgtttcctttgttatgtgcttctt |
4657203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 4656437 - 4656614
Alignment:
| Q |
8 |
tgagatgaacggctgagatagaaaaatgtgtgaaactgcgtgctgattttacaacagtaaaacctaatctgtgataattatacaacgactatttattttt |
107 |
Q |
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| T |
4656437 |
tgagatgaacggttgagataaaaaattgcatgaaactgtgtgctgattttacaacaacaaaacttggtccgtgataattatacaacgactgcttattttt |
4656536 |
T |
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| Q |
108 |
ctaccctataagcttctcgcgcattctatgcattttagattatagaattctaacggcataaacacgtcataaaaacct |
185 |
Q |
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| T |
4656537 |
ctaccctatgagcttctcgcacattctatgcagtttggattatagaatccgaacgacataaatacatcataaaaacct |
4656614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 26598268 - 26598203
Alignment:
| Q |
7 |
ctgagatgaacggctgagatagaaaaatgtgtgaaactgcgtgctgattttacaacagtaaaacct |
72 |
Q |
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| T |
26598268 |
ctgagatgaacggctgagatcaaaaactgcgtgaaattgcgtgctgtttttacagcagcaaaacct |
26598203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 29054328 - 29054261
Alignment:
| Q |
7 |
ctgagatgaacggctgagatagaaaaa--tgtgtgaaactgcgtgctgattttacaacagtaaaacct |
72 |
Q |
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| T |
29054328 |
ctgagatgaacggctgagataaaaaaaactgtgtgaaactgcgtgctgtttttacaacagcaaaacct |
29054261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 9929409 - 9929368
Alignment:
| Q |
145 |
gattatagaattctaacggcataaacacgtcataaaaacctc |
186 |
Q |
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| T |
9929409 |
gattatagaattcgaacgtcataaacacctcataaaaacctc |
9929368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 30525806 - 30525859
Alignment:
| Q |
133 |
ctatgcattttagattatagaattctaacggcataaacacgtcataaaaacctc |
186 |
Q |
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| T |
30525806 |
ctatgcaatttggattatagaatccgaacggcataaacatctcataaaaacctc |
30525859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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