View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_high_6 (Length: 556)
Name: NF13305_high_6
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 243 - 538
Target Start/End: Original strand, 39036352 - 39036644
Alignment:
| Q |
243 |
tattcagattcaacttacagcaacatcaaatcaacacagaaaataaaattaatacaatagatttcgtatatataatgaaatttcagcttgtgatttataa |
342 |
Q |
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| T |
39036352 |
tattcagattcaacttacagcaacatcaaatcaacacagaaaataaaattaatacaatagatttcgtatatataattaaatttcagctcgtgatttataa |
39036451 |
T |
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| Q |
343 |
accctaaatcctaaatcacaaatcat-tataaacatcttgtctcattaaaaattgaaataaaacgaattcatggaaatgaaatgaagaaacgtatggaat |
441 |
Q |
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| T |
39036452 |
accctaaatcctaaatcacaaatcaaatataaacatcaggtctcattaaaaattgaaataaaacgaattcatggaaatgaaatgaagaaacgtatggaat |
39036551 |
T |
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| Q |
442 |
tatcagaaacgaaacaaacagagagaaatgaatgaaaattggaagggaattaggtcttacttcttcccatggctggctgcgctgcgttcctcgcgtc |
538 |
Q |
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| T |
39036552 |
tatcagaaacgaaacaaacagagagaaatgaatgaaaattggaaggtaattaggtcttacttcttccca----tggctgcgctgcgttcctcgcgtc |
39036644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 39036092 - 39036296
Alignment:
| Q |
19 |
atacatgacgcataatcaatgaaaacaaataataagagaattaaccataaaatt----------------tatagcttgcaagagatcagatggtagtgc |
102 |
Q |
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| T |
39036092 |
atacatgacgcataatcaatgaaaacaaataataagagaattaaccataaaattaaaattcagaagatattatagcttgcgagagatcagatggtagtgc |
39036191 |
T |
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| Q |
103 |
atgtttgtttcatcatgaaaaacagaaccgtatggataaatatcatcatttctcttgcaattcgtatactaatagtaccaaagacaacaaagaatgatag |
202 |
Q |
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| T |
39036192 |
atgtttgtttcatcatgaaaaacagaaccgtatggataaatatcatcatttctcttgcaatacgtatactaatagtaccaaagacaacaaagaatgatag |
39036291 |
T |
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| Q |
203 |
actcc |
207 |
Q |
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||||| |
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| T |
39036292 |
actcc |
39036296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 203 - 361
Target Start/End: Complemental strand, 43068937 - 43068779
Alignment:
| Q |
203 |
actcctcaaattctcaattaatttaaaacagctaaaacattattcagattcaacttacagcaacatcaaatcaacacagaaaataaaattaatacaatag |
302 |
Q |
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|||| ||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||||| |
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| T |
43068937 |
actcatcaaattctcaattaatataaaacaaataaaacatcatttagattcaacttacagcaacaccaaatcaaaacagaaaataaaattaatgcaatag |
43068838 |
T |
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| Q |
303 |
atttcgtatatataatgaaatttcagcttgtgatttataaaccctaaatcctaaatcac |
361 |
Q |
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| T |
43068837 |
ctgtcgtaaatataatgaaatttcagctcgtgatctataaaccctaaatcataaatcac |
43068779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 35545152 - 35545069
Alignment:
| Q |
79 |
ttgcaagagatcagatggtagtgcatgtttgtttcatcatgaaaaacagaaccgtatggataaatatcatcatttctcttgcaa |
162 |
Q |
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| T |
35545152 |
ttgcaagagatcagatggtagtgcatgtttgtttcatcatctataacagaaccgtatggatatatatcatcatttctcttgcaa |
35545069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 16936780 - 16936860
Alignment:
| Q |
78 |
cttgcaagagatcagatggtagtgcatgtttgtttcatcatgaaaaacagaaccgtatggataaatatcatcatttctctt |
158 |
Q |
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| T |
16936780 |
cttgcaagagatcagatggtagtgcatgtttgtttcatcatcaataacagaacatttgggataattatcatcatatctctt |
16936860 |
T |
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