View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_low_10 (Length: 441)
Name: NF13305_low_10
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 22 - 430
Target Start/End: Original strand, 35072993 - 35073395
Alignment:
| Q |
22 |
taggaccaagctagtagcacttccctcatatcatatccatggtccatccaaattttattttctctaaaatttaatcaaccgttctagatgtagttctagt |
121 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35072993 |
taggcccaagctagtagcacttccctcat-----atccatggtccatccaaattttattttctctaaaatttaatcaaccgttctagatgtagttcttgt |
35073087 |
T |
|
| Q |
122 |
ttctagaaacaaaaataggtaatgactgcataacaacctacaagcgtacacgtgtcatatagaactaaaaccttgtttgatctccacgtgtcaatatcat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
35073088 |
ttctagaaacaaaaataggtaatgactgcataacaacctacaagcgtacacgtgtcatatagaa-ttaaaccttgtttgatctccacgtgtcaatatcat |
35073186 |
T |
|
| Q |
222 |
aacacgtgatacgtgttaacgaagcaagcatgaaaataaacattcataatttcacacaccacctnnnnnnnnnnnnnnntaaccttttttctaatctctt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
35073187 |
aacacgtgatacgtgttaacgaagcaagcatgaaaataaacattcataatttcatacaccacctacaaaaaaataaaaataaccttttttctaatctctt |
35073286 |
T |
|
| Q |
322 |
ctgtttagatttgagtttgagcgccgaaggagacgatttatttaagctcacacacaccaaacttcaccaagataagtatattaccttacccaattggtta |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35073287 |
ctgtttagatttgagtttgagcgccgaaggagacgatttatttaagctcacacacaccaaacttcaccaagataagtatattaccttaccgaattggtta |
35073386 |
T |
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| Q |
422 |
ctgtttcat |
430 |
Q |
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||||||||| |
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| T |
35073387 |
ctgtttcat |
35073395 |
T |
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