View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_low_11 (Length: 434)
Name: NF13305_low_11
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 34675303 - 34675718
Alignment:
| Q |
1 |
aaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675303 |
aaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaa |
34675402 |
T |
|
| Q |
101 |
gccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgcta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675403 |
gccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgcta |
34675502 |
T |
|
| Q |
201 |
atgccgatcttcttcgctttgcttacaatgaaatctctccgaatacctctcttccacctcttcctcctcttgttgttccggcttcgtttcatcaatctca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34675503 |
atgccgatcttcttcgctttgcttacaatgaaatctctccgaattcctctcttccacctcttcctcctcttgttgttccggcttcgtttcatcaatctca |
34675602 |
T |
|
| Q |
301 |
aagacagtttagttcaagatttggtaatggaaatgttgatggaaatggattttactcttcttttccttatgctattccatggattaatgatacctcttat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34675603 |
aagacagtttagttcaagatttggtaatggaaatgttgatggaaatggattttactcttcttttccttatgctattccatggattaatgatacctcttct |
34675702 |
T |
|
| Q |
401 |
gaggatataagtggag |
416 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
34675703 |
gaggatataagtggag |
34675718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 33246367 - 33246317
Alignment:
| Q |
92 |
gcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggt |
142 |
Q |
| |
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||||||||||| || || ||| ||||||||||||||||||||||||||||| |
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| T |
33246367 |
gcttatgaagcagaagcgcgtttgagagatcctgtttatggttgtgttggt |
33246317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 43583292 - 43583509
Alignment:
| Q |
1 |
aaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaa |
100 |
Q |
| |
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|||||| ||||| || || || || ||||| ||||||||| | ||||| ||||| ||||||||||| || || ||||| ||||| ||||||||||||||| |
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| T |
43583292 |
aaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaacttctccctcaccaaagggaggatgctgtgaactcccttgcttatgaa |
43583391 |
T |
|
| Q |
101 |
gccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgcta |
200 |
Q |
| |
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||||| ||||| || || ||||| |||||||| ||||| || || |||||||| || || ||||||||||| || |||||||||||||| || |||||| |
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|
| T |
43583392 |
gccgaagcacgagttagggatccagtttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaactcgacgctgcta |
43583491 |
T |
|
| Q |
201 |
atgccgatcttcttcgct |
218 |
Q |
| |
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| ||||||||||||||| |
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|
| T |
43583492 |
acaccgatcttcttcgct |
43583509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 12360732 - 12360610
Alignment:
| Q |
71 |
gaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaagttc |
170 |
Q |
| |
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|||||||||||||| || |||||||||||||| |||||| | | | |||||| ||||||||||| || ||||| || || |||| || ||||||||| |
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|
| T |
12360732 |
gaagatgcagtgaactctcttgcttatgaagctgaggcaaggataaaagatccagtttatggttgcgtcggtgccatttcagtcctccaaagacaagtta |
12360633 |
T |
|
| Q |
171 |
agagacttcaaaaggaacttgat |
193 |
Q |
| |
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|| || ||||||||||||||| |
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| T |
12360632 |
ttaggctccaaaaggaacttgat |
12360610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 591287 - 591427
Alignment:
| Q |
68 |
agagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctgtttatggttgtgttggtgctatctctttccttcagagacaag |
167 |
Q |
| |
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||||||||| | |||||||| || ||||||||||| || ||| | | | |||||| || |||||||||||||| ||||| ||| | ||||| |||||| |
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| T |
591287 |
agagaagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatggttgtgttggagctatatctgtgcttcaaagacaac |
591386 |
T |
|
| Q |
168 |
ttcagagacttcaaaaggaacttgattctgctaatgccgat |
208 |
Q |
| |
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| | | |||||||||||||| ||| || | ||||||||| |
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| T |
591387 |
tccttaagcttcaaaaggaactcgatgctacaaatgccgat |
591427 |
T |
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