View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_low_12 (Length: 419)
Name: NF13305_low_12
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 2678271 - 2677862
Alignment:
| Q |
10 |
acatcatcaatattacaaacaccatttatcccacatgctccataattatcacataaatcttttcttgcctcgtacattttagtccacttaacgatactgc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2678271 |
acatcatcaatattacaaacaccatttatcccacatgctccataattatcacataaatcttttctcgcctcgtacattttagtccacttaacgatactgc |
2678172 |
T |
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| Q |
110 |
tgtcccatatatatctttccaacaatccatcatccctcatcataaaccttgacaatctatctccaggttcatcccaatacactacctcattcttggttac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2678171 |
tgtcccatatatatctttccaacaatccatcatccctcatcataaaccttgacaatctatctccaggttcatcccaatacactacctcattcttggttac |
2678072 |
T |
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| Q |
210 |
tgaaagttgtggcttgaaggctgtaactcctataaacgatgtccaatcatcggaattaaaacgaacgccattccaaatcccacttctaaatgtgatgttc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2678071 |
tgaaagttgtggcttgaaggctgtaactcctataaacgatgtccaatcatcggaattaaaacgaacgccattccaaatcccacttctaaacgtgatgttc |
2677972 |
T |
|
| Q |
310 |
tttccttggcaaatcactaactcagcaaattctttatgatcaaagttgtaggtaaaacttccataagaaggatcatcatcagcactcttccatgatttca |
409 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2677971 |
tttccttggtgaatcactaactcagcaaattctttatgatcaaagttgtaggtaaaacttccataagaaggatcatcatcagcactcttccatgatgtca |
2677872 |
T |
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| Q |
410 |
aatatctatc |
419 |
Q |
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| T |
2677871 |
aatatctatc |
2677862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 3052336 - 3052613
Alignment:
| Q |
10 |
acatcatcaatattacaaacaccatttatcccacatgctccataattatcacataaatcttttcttgcctcgtacattttagtccacttaacgatactgc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3052336 |
acatcatcaatattacaaacaccatttatcccacatgctccataattatcacataaatcttttcttgcctcgtacattttagtccacttaacgatactgc |
3052435 |
T |
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| Q |
110 |
tgtcccatatatatctttccaacaatccatcatccctcatcataaaccttgacaatctatctccaggttcatcccaatacactacctcattcttggttac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3052436 |
tgtcccatatatatctttccaacaatccatcatccctaatcataaaccttgacaatctatctccaggttcatcccaattcactacctcattcttggttac |
3052535 |
T |
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| Q |
210 |
tgaaagttgtggcttgaaggctgtaactcctataaacgatgtccaatcatcggaattaaaacgaacgccattccaaatccc |
290 |
Q |
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||||||||||||| | | ||| | |||| |||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3052536 |
tgaaagttgtggcctaagggc---cattcctgtaaaagatgtccaatcatcggaattaaaagcgacgccattccaaatccc |
3052613 |
T |
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