View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_low_13 (Length: 374)
Name: NF13305_low_13
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 149 - 357
Target Start/End: Original strand, 5360205 - 5360413
Alignment:
| Q |
149 |
cttcttgattctttgnnnnnnncttcatttcctcccaaaattgatccttcttttccacccccacttcgagatccaaacccccctagtggtgttcttcctt |
248 |
Q |
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| T |
5360205 |
cttcttgattctttgaaaaaaacttcatttcctcccaaaattgatccttcttttccacccccacttcaagatccaaacccccctagtggtgttcttcctt |
5360304 |
T |
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| Q |
249 |
tccttccaccagttcctttagtacctgaaattcttacaccaatattgccacctgaattgtcaccactaatccctagtggaatgactagtgaagaatccaa |
348 |
Q |
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| T |
5360305 |
tccttccaccagttcctttagtacctgaaattcttacaccaatattgccacctgaattgtcaccactaatccctagtggaatgactagtgaagaatccaa |
5360404 |
T |
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| Q |
349 |
atacaaatc |
357 |
Q |
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||||||||| |
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| T |
5360405 |
atacaaatc |
5360413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 5360057 - 5360140
Alignment:
| Q |
1 |
agcttcagcagcctcatcttcatcacttcacctaaaatcaagaaaacaaggactacacatattttcagcagggtttttctcatt |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5360057 |
agcttcagcagcctcatcttcatcacttcacctaaaatcaagaaaacaaggactacacattttttcagcagggtttttctcatt |
5360140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 5505893 - 5505862
Alignment:
| Q |
5 |
tcagcagcctcatcttcatcacttcacctaaa |
36 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5505893 |
tcagcagcctcatcttcatcacttcacctaaa |
5505862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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