View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_low_19 (Length: 296)
Name: NF13305_low_19
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 46 - 296
Target Start/End: Complemental strand, 42996309 - 42996060
Alignment:
| Q |
46 |
atatttaatatttgcgtgcgtcattcaatagaagattatttattcttattatattgtttcatgtatgtattgactaagtcatgcacnnnnnnnactattc |
145 |
Q |
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| T |
42996309 |
atatttaatatttgcgtgcgtcattcaatagaagattatttattcttattatattgtttcatgtatgtattgactaagtcatgcactttttttactattc |
42996210 |
T |
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| Q |
146 |
ctaaattaatgctactaccgttttcatgcttgactactctctaatgcatgcatgcttcccatattttcaattatatgtttccactatagtatagtagcaa |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
42996209 |
ctaaattaatgctactaccgttttcatgcttgactactctctaatgcatgcatgcttcccatattttccaat-tatgtttccactatagtatagtagcaa |
42996111 |
T |
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| Q |
246 |
cttcttgtacgtatgtgtctatactctacatacctgaaagtataatacctt |
296 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42996110 |
cttcttgtacgtgtgtgtctatactctacatacctgaaagtataatacctt |
42996060 |
T |
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