View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13305_low_6 (Length: 602)
Name: NF13305_low_6
Description: NF13305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13305_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 20 - 602
Target Start/End: Original strand, 3446732 - 3447314
Alignment:
| Q |
20 |
ccattgatgacgggtttgctacgctccaatggcttcaatcagtggccaagggagacgtacgtgacccgtggcttgaggaacatggtgactttgacaaaat |
119 |
Q |
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| T |
3446732 |
ccattgatgatgggtttgctacgctccaatggcttcaatcagtggccaagggagacgtacgtgacccgtggcttgaggaacatggtgactttgacaaaat |
3446831 |
T |
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| Q |
120 |
tttcctcataggagatagttctggaggaaacatagtccatgaagtggcagctagagccggttcggttgacctgaccccagttcggcttgcaggagcaatt |
219 |
Q |
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| T |
3446832 |
tttcctcataggagatagttctggaggaaacatagtccatgaagtggcagctagagctggttcggttgacctgaccccagttcggcttgcaggagcaatt |
3446931 |
T |
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| Q |
220 |
cccatccatcctgggtttgtcaggtcataccgaagccggtctgaaattgaaatgccacaatcaccatttctaacattggatatgttggacaagttcttgg |
319 |
Q |
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| T |
3446932 |
cccatccatcctgggtttgtcaggtcataccgaagccggtctgaaattgaaatgccacaatcaccatttctaacattggatatgttggacaagttcttgg |
3447031 |
T |
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| Q |
320 |
gcttggcactaccaattgggagcaacaaggaccaccccttcacatgcccgatgggctcgggggcaccaccacttgatggattgaaactgccgccatttct |
419 |
Q |
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| T |
3447032 |
gcttggcactaccaattgggagcaacaaggatcaccccttcacatgcccgatgggctcgggggcaccaccactcgatggattgaaactgccgccatttct |
3447131 |
T |
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| Q |
420 |
tttgtgcctagcagaaaatgatttgctgaaggacacagaaatggagtactatgaagcaatgaagaaggccaataaagaagtggacctgtttgtgagcaag |
519 |
Q |
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| T |
3447132 |
tttgtgcctagcagaaaatgatttgctgaaggacacagaaatggagtactatgaagcaatgaagaaggccaataaagaagtggacctgtttgtgagcaag |
3447231 |
T |
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| Q |
520 |
ggaatgactcatagtttctatctcaacaagattgctgtggatttagaccccactgtcggtgcccaaatgaatgcactcattgg |
602 |
Q |
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| T |
3447232 |
ggaatgactcatagtttctatctcaacaagattgctgtggatttagaccccactgtcggtgcccaaatgaatgcactcattgg |
3447314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 602
Target Start/End: Original strand, 3450181 - 3450264
Alignment:
| Q |
517 |
aagggaatgactcatagtttctatctcaacaagattgctgtggatttagaccccactgtcggtgcccaaatgaatgcactcattgg |
602 |
Q |
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| T |
3450181 |
aagggaatgactca--gtttctatctcaacaagattgctgtgtatttagaccccgttgttaggggcctaatgaatgcactcattgg |
3450264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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