View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_high_1 (Length: 579)
Name: NF13306_high_1
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 54222192 - 54221676
Alignment:
| Q |
18 |
atcaaaataagttaaatgacacttcgcatacattgttatcaaaataatagaacatgatttgatgattgaattgattaatttcgtaatcaacagtgtcaac |
117 |
Q |
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| T |
54222192 |
atcaaaataagttaaatgacacttcgcatacattgttatcaaaataatagaacatgatttgatgattgaattgattaatttcgtaatcaacagtgtcaac |
54222093 |
T |
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| Q |
118 |
tgattccaacaaatgcactgtgttggcaagaaagtgagcttgttttcaaagacaaaaattatagaagaatttatcgaaactagacctaaccgatgaccct |
217 |
Q |
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| T |
54222092 |
tgatcccaacaaatgcactgtgttggcaagaaagtgagcttgttttcaaagacaaaaattatagaagaatttatagaaactagacctaaccgatgaccct |
54221993 |
T |
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| Q |
218 |
atacactaagcagttatataagaatttgattgaatccaacccaggccaagttatgccgacaatccctat-tgatgatgaagcctccatacagtgga---- |
312 |
Q |
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| T |
54221992 |
atacactaagcagttatataagaatttgattgaatccaacccaggccaagttatgccgacaatccctatatgatgatgaagcctccatacagtggaatga |
54221893 |
T |
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| Q |
313 |
--------------atgatgaggccagttacacatcaagatagcctatgcaagcatcttttcaagcactagattttttggggcactaggtaaatacatnn |
398 |
Q |
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| T |
54221892 |
tgaggcaaacgtacatgatgaggccagttacacatcaagatagcctatgccagcatcttttcaagcactagattttttggggcactaggtaaatacataa |
54221793 |
T |
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| Q |
399 |
nnnnnncaaatagttaaaattaaagcttctataatccataatatacaaaaagtgatccacgtacatatatactgagatcactatcaaattgcagccacga |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54221792 |
aaaaaacaaatagttaaaattaaagcttctataatccataatatacaaaaagtgatccacgtacatatatactgagatcactatcaaattgcagccacga |
54221693 |
T |
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| Q |
499 |
gagaaggaagagaagta |
515 |
Q |
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| T |
54221692 |
gagaaggaagagaagta |
54221676 |
T |
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