View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_high_10 (Length: 354)
Name: NF13306_high_10
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 1103934 - 1104252
Alignment:
| Q |
18 |
atgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103934 |
atgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcatggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
1104033 |
T |
|
| Q |
118 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104034 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggt |
1104133 |
T |
|
| Q |
218 |
gactgttactcaaattgtcgaaacaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataacttat |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1104134 |
gactgttactcaaattgtcgaaacaaaatttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtaatgtttcaataacttat |
1104233 |
T |
|
| Q |
318 |
ttgaaccaaacacttgaga |
336 |
Q |
| |
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||||||||||||||||||| |
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| T |
1104234 |
ttgaaccaaacacttgaga |
1104252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 1087378 - 1087692
Alignment:
| Q |
18 |
atgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||| ||||||| ||||| |
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| T |
1087378 |
atgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcatggaaaagttgggacgatccatcttcgggagatttaacttggggtattg |
1087477 |
T |
|
| Q |
118 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggt |
217 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| | || |
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| T |
1087478 |
tccttagtagtaatccagaagttgtattgaaaaaaggatcagttgagattcatagaactggcccttggaatggagttggatttagtggagcacctgtgga |
1087577 |
T |
|
| Q |
218 |
gactgttactcaaattgtcgaa---acaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataact |
314 |
Q |
| |
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|| ||||||| |||||| | | |||| | ||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||| |
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| T |
1087578 |
gattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattacatatatagtcttgtaaacaagagtaatgtttcaataact |
1087677 |
T |
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| Q |
315 |
tatttgaaccaaaca |
329 |
Q |
| |
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||||||||||||||| |
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| T |
1087678 |
tatttgaaccaaaca |
1087692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 1046904 - 1047217
Alignment:
| Q |
18 |
atgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||| |
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| T |
1046904 |
atgaagcttggatgggacctaaaaattggtcttaatcgtccattaacttcttggaaaaattgggacgatccatcttcgggagatttaacttggggtattg |
1047003 |
T |
|
| Q |
118 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggt |
217 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
1047004 |
tccttcgtagtaatccagaaattgttttgaaaagaggatcagttgaaattcataggagtggtccttggaatggagttggatttagtggagcgcctatgga |
1047103 |
T |
|
| Q |
218 |
gactgttac-tcaa--attgtcgaaacaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataact |
314 |
Q |
| |
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|| |||||| |||| |||| | ||| | |||||||||| ||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||| |
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| T |
1047104 |
gattgttacatcaactgttgttgttgcaagatctgtgaacaattcaaatgaggtttattactcatatagtcttgtaaacaagagtaatgtttcaataact |
1047203 |
T |
|
| Q |
315 |
tatttgaaccaaac |
328 |
Q |
| |
|
|||||||||||||| |
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| T |
1047204 |
tatttgaaccaaac |
1047217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 1071717 - 1072030
Alignment:
| Q |
18 |
atgaagcttggatgggacctaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggatgatccgtcttcgggagattttacttgggctattg |
117 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| || |||| ||||| |
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| T |
1071717 |
atgaagcatggatgggacttaaaaaccggtcttaatcgtcaattaacttcttggaaaaattgggacgatccatcatcgggagatttaacatggggtattg |
1071816 |
T |
|
| Q |
118 |
tccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattcataggagtggtccttggaatggagttggatttagtggagcacccgcggt |
217 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1071817 |
tccttcatagtaatccagaaattgtattgaaaaaaggatcagttgaaattcacaggagtggtccttggaatggagttggatttagtggagcacctatgga |
1071916 |
T |
|
| Q |
218 |
gactgttac-tcaa--attgtcgaaacaaactttgtgaacaatacaaatgaagtttactacacatatagtcttgtaaacaagagtgtggtttcaataact |
314 |
Q |
| |
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|| | |||| |||| || | | |||| ||||| |||| ||||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |
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| T |
1071917 |
gattattacgtcaagtgttatagctacaacacctgtgatcaattcaaatgaagtttatttcacatatagtcttgtaaacaagagtatggtttcaataact |
1072016 |
T |
|
| Q |
315 |
tatttgaaccaaac |
328 |
Q |
| |
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|||||||||||||| |
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|
| T |
1072017 |
tatttgaaccaaac |
1072030 |
T |
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