View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_high_15 (Length: 305)
Name: NF13306_high_15
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 36341905 - 36342208
Alignment:
| Q |
9 |
agaagcaaaggccaaattggaaacaaagaggaagcatgcgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagc |
108 |
Q |
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| T |
36341905 |
agaagcataggccaaattggaaacaaagaggaagcatgtgatattctcaattatatacaggttacaacaataacttggctgatcacaaattaaagtcagc |
36342004 |
T |
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| Q |
109 |
actgattcagagagatattctcaattcaaattcaaatattactaaccgaaaatctatagaaaaattgcatcag-------tgatgagcaattgaattctc |
201 |
Q |
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| T |
36342005 |
actgattcagagagatattctcaattcaaattcaaatattgctaactgaaaatctatagaaaaactgcatcagtgatgactgatgagcaattgaattctc |
36342104 |
T |
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| Q |
202 |
taattgaaagttaaatattgttagacgaatatctgcacaataattgcagcaatcagttcactgatcttacacatattgatgtatcaaggcatctcttcca |
301 |
Q |
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| T |
36342105 |
taattcaaagttaaatattgttagatgaatatctgcacaataattgcagcaatcagttcactgatcttacacatattgatatatcaaggcatctcttcca |
36342204 |
T |
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| Q |
302 |
tctt |
305 |
Q |
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|||| |
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| T |
36342205 |
tctt |
36342208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 60 - 294
Target Start/End: Original strand, 39865270 - 39865504
Alignment:
| Q |
60 |
tatatacaggttacaacaataacttggctgatcacaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatattactaaccgaaa |
159 |
Q |
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| T |
39865270 |
tatatacaggttacaacaataacttggctgatcgcaaattaaagtcagcactgattcagagagatattctcaattcaaattcaaatatcgctaactgaaa |
39865369 |
T |
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| Q |
160 |
atctatagaaaaattgcatcagtgatgagcaattgaattctctaattgaaagttaaatattgttagacgaatatctgcacaataattgcagcaatcagtt |
259 |
Q |
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| T |
39865370 |
atctatacaataactgcatcagtaaccggcaattgaattatctaattcaaagacaaattctgttagatgaatatctgcacaataattgcagaaatcagtt |
39865469 |
T |
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| Q |
260 |
cactgatcttacacatattgatgtatcaaggcatc |
294 |
Q |
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| T |
39865470 |
cactgatcttacacatattgatatatcaaggcatc |
39865504 |
T |
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