View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_high_18 (Length: 237)
Name: NF13306_high_18
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_high_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 47193185 - 47192957
Alignment:
| Q |
9 |
acatcatcatggttcttattggttctaaacaaaaagaaccatacaaataaaattatggaaaactcaaacacccctatacctaatgctaaccaagtcaaga |
108 |
Q |
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| T |
47193185 |
acatcatcatggttcttattggttctaaacaaaaagaaccatacaaataaaattatggaaaactcaaacacccctatacctaatgctaaccaagtcaaga |
47193086 |
T |
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| Q |
109 |
aacttaatatggagtttttacttggtttttcgtagaatctattcaagggttgaaacaaagcaatggaacagttcaaaggtgaatgtttaaaaggaatggt |
208 |
Q |
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| T |
47193085 |
aacttaatatggagtttttacttggtttttcgtagaatctattcaagggttgaaacaaagcaatggaacagttcaaaggtgaatgtttaaaaggaatggt |
47192986 |
T |
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| Q |
209 |
ggaagataacaaagtatttttgggcaatt |
237 |
Q |
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| T |
47192985 |
ggaagataacaaagtatttttgggcaatt |
47192957 |
T |
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