View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13306_high_4 (Length: 453)

Name: NF13306_high_4
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13306_high_4
NF13306_high_4
[»] chr5 (12 HSPs)
chr5 (18-438)||(38155658-38156078)
chr5 (30-251)||(38443359-38443580)
chr5 (69-251)||(38215530-38215712)
chr5 (69-251)||(38182644-38182826)
chr5 (69-251)||(38188305-38188487)
chr5 (69-251)||(38209870-38210052)
chr5 (69-251)||(38169774-38169956)
chr5 (69-251)||(38185563-38185745)
chr5 (69-251)||(38212612-38212794)
chr5 (76-251)||(38452961-38453136)
chr5 (68-190)||(38219953-38220075)
chr5 (385-438)||(38170956-38171007)


Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 38156078 - 38155658
Alignment:
Q  18 atgaacggaaatattgagcgagtcgatggacaactgtttgagattgatagtggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaagg 117  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||    
T  38156078 atgaatggaaatattgagcgagtcgacggacaactgtttgagattgatagtggaagccaaagaattaaaagatgccttgttgttgctaatagggagaggg 38155979  T
Q  118 aagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacgattgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaa 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  38155978 aagaggaagaccctcaactttgcaggctttcgtgaaaagcaacataaacgatcgttctcgaacatcatatgatcaagatcttcttcgttataaaccggaa 38155879  T
Q  218 tcaaagcatcgagatcttcaccaaggagttgatatatgctaaaatctatggaactgtttcattcacaaccctatatgctaaaatctttatcctaccctga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38155878 tcaaagcatcgagatcttcaccaaggagttgatatatgctaaaatctatggaactgtttcattcacaaccctatatgctaaaatctttatcctaccctga 38155779  T
Q  318 ataatctatttgttcattgcttatcnnnnnnnnnnnntataatctatttgttcaatctaaattagtttgttcaactgttgataataaggctgtagggaat 417  Q
    |||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38155778 ataatctatttgttcattgcttatcaaaaaagaaaaatataatctatttgttcaatctaaattagtttgttcaactgttgataataaggctgtagggaat 38155679  T
Q  418 gacacatatttgagttgatat 438  Q
    |||||||||||||||||||||    
T  38155678 gacacatatttgagttgatat 38155658  T

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Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 38443580 - 38443359
Alignment:
Q  30 attgagcgagtcgatggacaactgtttgagattgatagtggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagacc 129  Q
    ||||||||||| || ||| || |||||||| |||||||  ||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||    
T  38443580 attgagcgagttgacggaaaattgtttgagcttgatagcagaagccaaagaatcaaaagatgccttgttgttgttaacagggacagggaagaggaagacc 38443481  T
Q  130 ctcaaccttgcaggctttcgtgaaaagcaacatatacgattgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcga 229  Q
    ||||||| |||||||||||||||||||  ||| |||||||  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| |    
T  38443480 ctcaaccatgcaggctttcgtgaaaagtgacacatacgatcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatcaa 38443381  T
Q  230 gatcttcaccaaggagttgata 251  Q
     |||||||||||||||||||||    
T  38443380 aatcttcaccaaggagttgata 38443359  T

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Target: chr5; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 38215712 - 38215530
Alignment:
Q  69 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 168  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  38215712 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggcttttgtgaaaagcgacacatacga 38215613  T
Q  169 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 251  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||    
T  38215612 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaaggagttgata 38215530  T

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Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 38182644 - 38182826
Alignment:
Q  69 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 168  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  38182644 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggcttttgtgaaaagcgacacatacga 38182743  T
Q  169 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 251  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38182744 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38182826  T

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Target: chr5; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 38188487 - 38188305
Alignment:
Q  69 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 168  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  38188487 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggcttttgtgaaaagcgacacatacga 38188388  T
Q  169 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 251  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38188387 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38188305  T

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Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 38209870 - 38210052
Alignment:
Q  69 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 168  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||    
T  38209870 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggcttttgtgaaaagcgacacatacga 38209969  T
Q  169 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 251  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38209970 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38210052  T

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Target: chr5; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 38169956 - 38169774
Alignment:
Q  69 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 168  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||||||||| || |||||||||||||||||||  ||| ||||||    
T  38169956 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcagccatgcaggctttcgtgaaaagtgacacatacga 38169857  T
Q  169 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 251  Q
    |  | | ||||||| |||||||  |||||||||||||||||||  || ||||||||||||| |||||||||||||||||||||    
T  38169856 tcatactcgaacataatatgattgagatcttcttcgttataaattgggatcaaagcatcgaaatcttcaccaaggagttgata 38169774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 38185745 - 38185563
Alignment:
Q  69 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 168  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||| ||||||| |||||||||| ||||||||| ||| ||||||    
T  38185745 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagactctcaaccatgcaggcttttgtgaaaagcgacacatacga 38185646  T
Q  169 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 251  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38185645 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38185563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 38212612 - 38212794
Alignment:
Q  69 ggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacga 168  Q
    |||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||| ||||||| |||||||||| ||||||||| ||| ||||||    
T  38212612 ggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagactctcaaccatgcaggcttttgtgaaaagcgacacatacga 38212711  T
Q  169 ttgttcacgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 251  Q
    |  | | |||||||||||||||  |||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||    
T  38212712 tcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgata 38212794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 38452961 - 38453136
Alignment:
Q  76 aaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacgattgttca 175  Q
    ||||||| |||||||| |||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||  ||| ||| |||  | |     
T  38452961 aaagaatcaaaagatgccttgttgttgttaacaaggacagggaagaggaagaccctcaaccatgcaggctttcgtgaaaagtgacacatatgatcatact 38453060  T
Q  176 cgaacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata 251  Q
    | |||||||||||||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  38453061 ctaacatcatatgattgagatcttcttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgata 38453136  T

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Target: chr5; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 68 - 190
Target Start/End: Complemental strand, 38220075 - 38219953
Alignment:
Q  68 tggaagccaaagaattaaaagatgtcttgttgttgttaatagggacaaggaagaggaagaccctcaaccttgcaggctttcgtgaaaagcaacatatacg 167  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  38220075 tggaagccaaagaatcaaaagatgccttgttgttgttaatagggaccgggaagaggaagaccctcaaccatgcaggctttcgtgaaaagcgacacatacg 38219976  T
Q  168 attgttcacgaacatcatatgat 190  Q
    ||  | | |||||||||||||||    
T  38219975 atcatactcgaacatcatatgat 38219953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 38171007 - 38170956
Alignment:
Q  385 tgttcaactgttgataataaggctgtagggaatgacacatatttgagttgatat 438  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||| ||||    
T  38171007 tgttcaattgttgataataagactgtagggaatg--acatatttgagtttatat 38170956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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