View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13306_high_5 (Length: 447)
Name: NF13306_high_5
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 2789817 - 2789407
Alignment:
| Q |
20 |
aatagcattcaaagttagattgttcaagaagttacgtaagaagaacacaatgcttgtcgtgaatataatcaactatattgtgttactaataacttttaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2789817 |
aatagcattcaaagttagattgttcaagaagttacgtaagaagaacacaatgcttgtcatgaatataatcaactatattgtgttactaataacttttaat |
2789718 |
T |
|
| Q |
120 |
gtcaaaagagaaagaagggatagagacataagaaagtaccattttgccagcaatgaggaagaagcgccctacgaaatgtgaatgaaagaaaggggagggg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2789717 |
gtcaaaagagaaagaagggatagagacataagaaagtaccattttgccagcaatgaggaagaagcgccctacgaaatgtgaatgaaagaaaggggagggg |
2789618 |
T |
|
| Q |
220 |
agtaatagagagaatggaaaaatgggagcaacaaatgcaatgaaaattaaggagagaaataacaaataacaaataaagatccttgttttttggagccacg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2789617 |
agtaatagagagaatggaaaaatgggagcaacaaatgcaatgaaaattaagaagagaaataacaaataacaaataaagatccttgttttttggagccacg |
2789518 |
T |
|
| Q |
320 |
agaggtggaactttgaggagactaatatagtggttaaagaatagaaactgggtgagaaattaatgggtgtggctgttaagattgagatctattttgcttc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2789517 |
agaggtggaactttgaggagactaatatagtggttaaagaatagaaactgggtgagaaattaatgggtgtggctgttaagattgagatctattttgcttc |
2789418 |
T |
|
| Q |
420 |
cacaagttcat |
430 |
Q |
| |
|
||||||||||| |
|
|
| T |
2789417 |
cacaagttcat |
2789407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 365
Target Start/End: Original strand, 40865916 - 40865997
Alignment:
| Q |
283 |
aaataacaaataaagatccttgttttttggagccacgagaggtggaactttgaggagactaatatagtggttaaagaatagaa |
365 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||| |||||||||||||||||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
40865916 |
aaataacgaatgaagatccttgttttatggagcg-cgagaggtggaactttgacaagactaagatagtagttgaagaatagaa |
40865997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University