View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13306_high_6 (Length: 432)

Name: NF13306_high_6
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13306_high_6
NF13306_high_6
[»] chr3 (16 HSPs)
chr3 (1-250)||(33216628-33216877)
chr3 (1-250)||(29833270-29833519)
chr3 (7-250)||(12938396-12938639)
chr3 (30-221)||(50650394-50650585)
chr3 (7-221)||(31658799-31659012)
chr3 (160-249)||(20104177-20104266)
chr3 (163-251)||(39833366-39833454)
chr3 (161-246)||(5232804-5232889)
chr3 (161-250)||(53282147-53282236)
chr3 (168-250)||(29703677-29703759)
chr3 (161-249)||(36950292-36950380)
chr3 (7-104)||(20104322-20104419)
chr3 (30-104)||(39833233-39833307)
chr3 (7-104)||(5232946-5233043)
chr3 (193-243)||(48155209-48155259)
chr3 (51-104)||(36950181-36950234)
[»] chr5 (8 HSPs)
chr5 (1-251)||(31482042-31482292)
chr5 (7-249)||(1828408-1828650)
chr5 (30-249)||(41413445-41413664)
chr5 (30-252)||(30624857-30625079)
chr5 (7-249)||(40313873-40314115)
chr5 (163-249)||(24788459-24788545)
chr5 (161-250)||(39884549-39884638)
chr5 (30-96)||(24788326-24788392)
[»] chr8 (8 HSPs)
chr8 (1-249)||(13802653-13802901)
chr8 (161-250)||(3879601-3879690)
chr8 (163-249)||(531539-531625)
chr8 (160-250)||(30945583-30945676)
chr8 (30-154)||(23613574-23613699)
chr8 (30-104)||(30945455-30945527)
chr8 (30-104)||(531684-531758)
chr8 (51-104)||(3879490-3879543)
[»] chr7 (15 HSPs)
chr7 (267-416)||(23172752-23172902)
chr7 (268-416)||(23188725-23188872)
chr7 (51-250)||(29833968-29834167)
chr7 (30-220)||(19436697-19436887)
chr7 (163-249)||(45972278-45972364)
chr7 (160-249)||(29243235-29243324)
chr7 (160-249)||(47327797-47327886)
chr7 (76-221)||(29258411-29258556)
chr7 (177-250)||(34093972-34094045)
chr7 (177-251)||(6442490-6442564)
chr7 (9-97)||(6442633-6442721)
chr7 (30-104)||(45972423-45972497)
chr7 (7-104)||(47327942-47328039)
chr7 (13-93)||(34094118-34094198)
chr7 (30-104)||(29243380-29243452)
[»] chr6 (5 HSPs)
chr6 (8-221)||(33694805-33695017)
chr6 (30-221)||(12938666-12938857)
chr6 (30-206)||(28138042-28138217)
chr6 (70-134)||(14532051-14532115)
chr6 (193-243)||(4488578-4488628)
[»] chr4 (16 HSPs)
chr4 (30-251)||(27292940-27293161)
chr4 (30-254)||(4919006-4919229)
chr4 (7-251)||(42976325-42976568)
chr4 (168-252)||(55919527-55919611)
chr4 (163-250)||(20133264-20133351)
chr4 (161-250)||(15531345-15531434)
chr4 (177-250)||(47031597-47031670)
chr4 (9-97)||(45989591-45989679)
chr4 (177-249)||(45989748-45989820)
chr4 (161-252)||(24228277-24228368)
chr4 (177-250)||(42069184-42069257)
chr4 (13-97)||(47031444-47031528)
chr4 (7-97)||(42069025-42069115)
chr4 (30-104)||(20133410-20133484)
chr4 (30-104)||(55919389-55919463)
chr4 (366-402)||(46702560-46702596)
[»] chr2 (17 HSPs)
chr2 (30-221)||(14096280-14096471)
chr2 (160-250)||(37078801-37078891)
chr2 (163-251)||(17690457-17690545)
chr2 (161-250)||(7089078-7089167)
chr2 (163-244)||(16429724-16429805)
chr2 (163-251)||(14810250-14810337)
chr2 (163-250)||(15330588-15330676)
chr2 (163-250)||(18977221-18977308)
chr2 (161-244)||(33755204-33755287)
chr2 (30-104)||(14810117-14810191)
chr2 (30-104)||(16429864-16429938)
chr2 (30-104)||(15330735-15330809)
chr2 (30-104)||(37261699-37261773)
chr2 (163-250)||(37261832-37261911)
chr2 (7-104)||(37078947-37079044)
chr2 (30-117)||(18977113-18977200)
chr2 (30-96)||(17690612-17690678)
[»] chr1 (9 HSPs)
chr1 (30-221)||(27286188-27286379)
chr1 (7-248)||(39241555-39241793)
chr1 (30-250)||(52385816-52386036)
chr1 (163-249)||(12981376-12981462)
chr1 (163-250)||(45348403-45348490)
chr1 (177-252)||(45325765-45325840)
chr1 (30-104)||(12981521-12981595)
chr1 (30-104)||(45348270-45348344)
chr1 (9-97)||(45325616-45325704)
[»] scaffold0166 (2 HSPs)
scaffold0166 (163-249)||(30842-30928)
scaffold0166 (30-96)||(30709-30775)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 33216628 - 33216877
Alignment:
Q  1 tagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaag 100  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  33216628 tagggtggagagagaatttaaattagacaaaaaattatgcgtagatgctgtaccataataccatagaggccaaacaaatctaaccattaagatcatgaag 33216727  T
Q  101 taaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  33216728 taaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttaggacgtgtcatcacttaaaatctgattggctcattcaa 33216827  T
Q  201 acgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33216828 acgacttcaccgaagaagtcattttaatgacttcatcgtagaagctccct 33216877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 29833519 - 29833270
Alignment:
Q  1 tagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaag 100  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |||    
T  29833519 tagggtggagagagaattgaaattagacaaacaattatgtgaagatggtgtaccataataccatagaaaccaaacaaatctaaccattaagatcatcaag 29833420  T
Q  101 taaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  29833419 taaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaa 29833320  T
Q  201 acgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    ||||||||||| || ||||||||||| ||||||| |||||||||||||||    
T  29833319 acgacttcaccaaagaagtcattttactgacttcttcgtagaagctccct 29833270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 12938639 - 12938396
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatc 106  Q
    ||||||||| ||| ||||| |  |||||| ||||||| | | ||||||| |||| | |||| |||||  ||| |||||| |||||||| |||| ||||      
T  12938639 ggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaact 12938540  T
Q  107 tgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 206  Q
    |||| | ||||||||||||| ||||||||||||||||||||||||||| | || |||||| ||||||  ||| ||||||||||||  |||||||||||||    
T  12938539 tgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgact 12938440  T
Q  207 tcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||||| |||||||||    ||||||||| ||||||||||||    
T  12938439 tcaccgaagaagtcatttacccgacttcatcatagaagctccct 12938396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 50650394 - 50650585
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |     
T  50650394 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 50650493  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 221  Q
    |||||||||||||||| ||||||||   || |||||| ||||||  ||| |||||||||||||| | | ||||||||| |||||||||||||    
T  50650494 caagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaacgactttaccgaaaaagtca 50650585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 31658799 - 31659012
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatc 106  Q
    |||||||||||||| ||||||  |||||| ||||||||||| ||||||| |||| | ||||||||||  |||||||||| |||||||||| ||  |||      
T  31658799 ggagagagaattgatattagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcataaaagaaact 31658898  T
Q  107 tgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 206  Q
    |||||||||||| || ||||||||||||||||||||||| ||||| ||  ||| | |||  ||||||| ||| |||||||||||| | | | ||||||||    
T  31658899 tgtctatggtgggacttatggagcaagtgatccatattagaatttatc-ctacatgtgatgtgtcatctcttgaaatctgattggttgaattaaacgact 31658997  T
Q  207 tcaccgaaaaagtca 221  Q
     ||||||| ||||||    
T  31658998 gcaccgaagaagtca 31659012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 20104266 - 20104177
Alignment:
Q  160 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    ||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||    
T  20104266 ttctgacgtgtcatcacttaaaatctgattggcctattcaaacgatttcaccgaaaaagtcattttcctgacttcttcgtagaagctccc 20104177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 39833366 - 39833454
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 251  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||||    
T  39833366 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctcccta 39833454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 5232889 - 5232804
Alignment:
Q  161 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagct 246  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||  ||||||| |||||||||||    
T  5232889 tctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagct 5232804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 53282236 - 53282147
Alignment:
Q  161 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||| || ||||||||||||    
T  53282236 tctgacgtgtcatcacttgaaatctgattggcccattcaaacgacttcaccgaagaagtcatttttctgacttcttcatagaagctccct 53282147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 29703677 - 29703759
Alignment:
Q  168 tgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||    
T  29703677 tgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaagctccct 29703759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 36950292 - 36950380
Alignment:
Q  161 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    |||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||  ||||||| || |||||||||||    
T  36950292 tctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaagctccc 36950380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 20104419 - 20104322
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||||||||||  | ||||  |||| | ||||||||||||||||||| |||| | || ||| |||  |||||||||||||||||||||||| ||||    
T  20104419 ggagagagaattggtactagaagaaaattaatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatgaaataaa 20104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 39833233 - 39833307
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  39833233 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 5233043 - 5232946
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||||||||||  | ||||  |||| | ||||||||||||||||||| |||| | || ||| |||  ||||||||| |||||||||||||| ||||    
T  5233043 ggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 5232946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 48155209 - 48155259
Alignment:
Q  193 tcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaa 243  Q
    |||||| || ||||||||| ||||||||||||||| ||||||| |||||||    
T  48155209 tcattctaatgacttcaccaaaaaagtcattttaacgacttcaccgtagaa 48155259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 36950181 - 36950234
Alignment:
Q  51 taccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    ||||| |||| | ||||||||||  |||||||||||||||||||||||| ||||    
T  36950181 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 31482042 - 31482292
Alignment:
Q  1 tagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31482042 tagggtggagagagaattgaaattagacaaaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaag 31482141  T
Q  101 taaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||    
T  31482142 taaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtccttacttctgaagtgtcatcacttaaaatttgattggctcattcaa 31482241  T
Q  201 acgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 251  Q
    ||||||| |||||| ||||||||||| ||||||| ||||||||||||||||    
T  31482242 acgactttaccgaagaagtcattttactgacttcttcgtagaagctcccta 31482292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 1828650 - 1828408
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatc 106  Q
    ||||||||| ||| ||||| |  |||||| ||||||| | | ||||||| |||| | |||| |||||  ||| |||||| |||||||| |||| ||||      
T  1828650 ggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaact 1828551  T
Q  107 tgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 206  Q
    |||| | ||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||  ||| ||||||||||||  |||||||||||||    
T  1828550 tgtccacggtggaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgact 1828451  T
Q  207 tcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    |||||||| |||||||||    ||||||||| |||||||||||    
T  1828450 tcaccgaagaagtcatttacccgacttcatcatagaagctccc 1828408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 41413445 - 41413664
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| ||||||| | | ||||||| |||| | |||| |||||  ||| |||||| |||||||| |||| ||||  |||| | ||||||||||||| ||    
T  41413445 aaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaacttgtccacggtggaacatatgaag 41413544  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 229  Q
    ||||||||||||||||||||||||| | || |||||| ||||||  ||| ||||||||||||  ||||||||||||||||||||| |||||||||    |    
T  41413545 caagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccg 41413644  T
Q  230 acttcatcgtagaagctccc 249  Q
    |||||||| |||||||||||    
T  41413645 acttcatcatagaagctccc 41413664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 30625079 - 30624857
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||| ||  |||| ||||  |||||||||||||||||||| ||    
T  30625079 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaaaattttgaaataaacttgtctatggtggaacatatgaag 30624980  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 229  Q
    |||||||||||||||| ||||| ||   || |||||| |||||| |||| |||||||||||| | | | ||||||||||||  ||||||||| |||   |    
T  30624979 caagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttctcg 30624880  T
Q  230 acttcatcgtagaagctccctat 252  Q
    ||||| || ||||||||||||||    
T  30624879 acttcttcatagaagctccctat 30624857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 40314115 - 40313873
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatc 106  Q
    ||||||||| ||| ||||| |  |||||| ||||||| | | ||||||| |||| | |||| |||||  ||| |||||| |||||||| |||| ||||      
T  40314115 ggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaact 40314016  T
Q  107 tgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 206  Q
    |||| | ||||||||||||| ||||||||||||||||| ||||||||| | || |||||| ||||||  ||| ||||||||||||  |||||||||||||    
T  40314015 tgtccacggtggaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgact 40313916  T
Q  207 tcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    |||||||| |||||||||    ||||||||| |||||||||||    
T  40313915 tcaccgaagaagtcatttacccgacttcatcatagaagctccc 40313873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 24788459 - 24788545
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  24788459 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 24788545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 39884638 - 39884549
Alignment:
Q  161 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||| ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||  |||||||  ||||||| ||||||    
T  39884638 tctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaaactccct 39884549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 24788326 - 24788392
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcat 96  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||    
T  24788326 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcat 24788392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 13802653 - 13802901
Alignment:
Q  1 tagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||| |||    
T  13802653 tagggtggagagagaattgaaattagacaaaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcatcaag 13802752  T
Q  101 taaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  13802753 taaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatctgattggttcattcaa 13802852  T
Q  201 acgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  13802853 acgactttaccgaaaaagtcattttactgacttcttcgtagaagctccc 13802901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 3879601 - 3879690
Alignment:
Q  161 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||||    
T  3879601 tctgacgtgtcatcacttgaaatctaattggctcattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcgtagaagctccct 3879690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 531625 - 531539
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  531625 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 531539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 30945583 - 30945676
Alignment:
Q  160 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcacc---gaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    ||||||| |||||||| |||||||||||||| | ||||||||||||||||||   ||| ||||||||||  |||||||||| ||||||||||||    
T  30945583 ttctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagaagtcattttcctgacttcatcatagaagctccct 30945676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 23613699 - 23613574
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcat-gaagtaaatctgtctatggtggaacatatgga 128  Q
    |||||| ||||||||| | ||||||| |||| | | |||||||||||||||||||| |||||||| |  ||  |||  | || |||||||||||||| ||    
T  23613699 aaaaatcatgtgtagaggctgtaccacaatatcatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaagttatccatggtggaacatattga 23613600  T
Q  129 gcaagtgatccatattataatttgtc 154  Q
    ||||||| ||||||||| ||||||||    
T  23613599 gcaagtggtccatattagaatttgtc 23613574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 30945455 - 30945527
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| ||||   |||||| |||  |||||||||||||||||||||||| ||||    
T  30945455 aaaaatcatgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 531758 - 531684
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| || ||||| ||||    
T  531758 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaaataaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 3879490 - 3879543
Alignment:
Q  51 taccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    ||||| |||| | ||||||||||  |||||||||||||||||||||||| ||||    
T  3879490 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 267 - 416
Target Start/End: Original strand, 23172752 - 23172902
Alignment:
Q  267 cgcaacaacataattaacaaatgaaacattatccgcaatctaacaacataaataaaaaatatataattaacagaatcaaggaaacaatgtcactagtata 366  Q
    |||||||||||| |||||||||||||| | ||| |||||||||||||||||||| || | |||||||||||||||||||  |||||||||||||||||||    
T  23172752 cgcaacaacatagttaacaaatgaaacctcatcagcaatctaacaacataaatacaataaatataattaacagaatcaaacaaacaatgtcactagtata 23172851  T
Q  367 aattcaacaacattgaacaaatctcaaaataaa-cccccatcatacaaaaa 416  Q
    |||| | ||||||| |||||||||||||||||| |||||||||||||||||    
T  23172852 aattaagcaacatttaacaaatctcaaaataaatcccccatcatacaaaaa 23172902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 268 - 416
Target Start/End: Original strand, 23188725 - 23188872
Alignment:
Q  268 gcaacaacataattaacaaatgaaacattatccgcaatctaacaacataaataaaaaatatataattaacagaatcaaggaaacaatgtcactagtataa 367  Q
    |||||||||||||||||||| | ||||| ||  || ||||||| |  ||||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  23188725 gcaacaacataattaacaaacgtaacatcattagcgatctaacta--taaataaaaaatatataattagcagaatcaagcaaacaatgtcgctagtataa 23188822  T
Q  368 attcaacaacattgaacaaatctcaaaataaa-cccccatcatacaaaaa 416  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  23188823 atccaacaacattgaacaaatctcaaaataaatcccccatcatacaaaaa 23188872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 29833968 - 29834167
Alignment:
Q  51 taccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatt 150  Q
    ||||| |||| | |||||||||||||||||||||  |||||||| |||| ||||  |||||||||||||||||||| |||||||||||||||||| | ||    
T  29833968 taccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattagagtt 29834067  T
Q  151 tgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    ||||   || |||||||||||||  ||| |||||||||||||| | | ||||||||| ||| ||||||||| ||    |||||| |||||||||||||||    
T  29834068 tgtcccaacatctgacatgtcatggcttgaaatctgattggctgaattaaacgactttaccaaaaaagtcaattccccgacttcttcgtagaagctccct 29834167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 19436887 - 19436697
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| ||||||| | | ||||||| |||| | |||||||||||||||||||||  |||||||| |||| ||||  |||||||||||||||||||| |     
T  19436887 aaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 19436788  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtc 220  Q
    |||||||||||||||| ||||||||   || | |||| | ||||  ||| |||||||||||||| | | ||||||||||||||||||||||    
T  19436787 caagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtc 19436697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 45972364 - 45972278
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  45972364 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 45972278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 29243324 - 29243235
Alignment:
Q  160 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    ||||||| |||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  29243324 ttctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 29243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 47327886 - 47327797
Alignment:
Q  160 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    ||||||| ||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||||  ||||||| ||||||||||||||    
T  47327886 ttctgacgtgtcatcgcttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagctccc 47327797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 29258556 - 29258411
Alignment:
Q  76 aaatctaaccattaa-gatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtc-attacttctgacatgtcat 173  Q
    |||||||||| |||| ||| ||||| ||||  |||| | ||||||||| |||||||||||||||||| ||| |||||||| ||||  |||||| ||||||    
T  29258556 aaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttgtccatta--tctgacgtgtcat 29258459  T
Q  174 cacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 221  Q
    ||||| ||||||||||||| ||||||||| ||| || |||| ||||||    
T  29258458 cacttgaaatctgattggcccattcaaacaactgcatcgaagaagtca 29258411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 34094045 - 34093972
Alignment:
Q  177 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||  ||||||| |||||||||||||||    
T  34094045 ttaaaatctgattggcccattcaaacgactgcaccgaagaagtcatttttctgacttcttcgtagaagctccct 34093972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 6442564 - 6442490
Alignment:
Q  177 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 251  Q
    |||||||||||||||| ||||||||||||| |||| || ||||||||||  ||||||| ||||||||||||||||    
T  6442564 ttaaaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttcttcgtagaagctcccta 6442490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 6442721 - 6442633
Alignment:
Q  9 agagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 97  Q
    |||||||||||||||||||  |||||| ||||||||||| | ||||| |||| | ||||||||||  |||||||||  |||||||||||    
T  6442721 agagagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatcatg 6442633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 45972497 - 45972423
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  45972497 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 47328039 - 47327942
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||||||||||  | ||||  |||| | ||||||||||||||||||| |||| | || ||| |||  ||||||||| |||||||||||||| ||||    
T  47328039 ggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 47327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 34094198 - 34094118
Alignment:
Q  13 agaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagat 93  Q
    |||||||||||||||  |||||| ||||||||||| | ||||| |||| | |||||| |||  |||||||||| |||||||    
T  34094198 agaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagat 34094118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 29243452 - 29243380
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| ||||   |||||| |||  |||||||||||||||||||||||| ||||    
T  29243452 aaaaatcatgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaa 29243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 33695017 - 33694805
Alignment:
Q  8 gagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatct 107  Q
    ||||||||| || ||||| |  |||||| || |||||| | ||||||| ||||   ||||| ||||| |||||||||  ||||||||||||| ||||| |    
T  33695017 gagagagaaatggaattataagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaagatcatgaaataaattt 33694918  T
Q  108 gtctatggtggaacatatggagcaagtgatccatattataatttgt-cattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 206  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| | |||||  ||| || ||||||||||||||||||||||||  |||||||||||||    
T  33694917 gtctatgatggaacatatggagcaagtgatccatattaaaatttttccatta--tctaacgtgtcatcacttaaaatctgattggtccattcaaacgact 33694820  T
Q  207 tcaccgaaaaagtca 221  Q
    |||||||||||||||    
T  33694819 tcaccgaaaaagtca 33694805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 12938857 - 12938666
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||||||  |||| ||||  |||||||||||||||||||| ||    
T  12938857 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaacttgtctatggtggaacatatgaag 12938758  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 221  Q
    |||||||||||||||| ||||||||   || |||||| ||||||| |||||||||||||||| | | | ||||||||||||  |||||||||    
T  12938757 caagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatctgattggttgaattaaacgacttcactaaaaaagtca 12938666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 28138042 - 28138217
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| |||||||||||  |||||| ||||   ||||||||||  |||||||||| ||||||||||||| ||||  |||| ||| ||| ||||||||||    
T  28138042 aaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatgatgggacatatggag 28138141  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 206  Q
    |||||| ||||||||| ||||||||  ||| |||||| |||||| |||| |||| ||||||||| | | ||||||||    
T  28138142 caagtggtccatattaaaatttgtc-ctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 28138217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 14532051 - 14532115
Alignment:
Q  70 ccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggagcaagt 134  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||| ||||||||    
T  14532051 ccaaacaaatctaaccattaagatcgtgaagtaaacctgtccatggtgaaacatatagagcaagt 14532115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 4488578 - 4488628
Alignment:
Q  193 tcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaa 243  Q
    |||||| || ||||||||| ||||||||||||||| ||||||| |||||||    
T  4488578 tcattctaatgacttcaccaaaaaagtcattttaacgacttcaccgtagaa 4488628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 27293161 - 27292940
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |     
T  27293161 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 27293062  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 229  Q
    |||||||||||||||| ||||||||   || | |||| ||||||  ||| |||||||||||||| | | ||||||||||||||||||||||| ||    |    
T  27293061 caagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattccccg 27292962  T
Q  230 acttcatcgtagaagctcccta 251  Q
    ||||| || |||||||||||||    
T  27292961 acttcttcatagaagctcccta 27292940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 4919229 - 4919006
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| |||||||||   ||||||| |||| | ||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||| |     
T  4919229 aaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaagatcttgaaataaacttgtctatggtggaacatatgaaa 4919130  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 229  Q
    |||||||||||||||| ||||||||   || |||||| ||||||  ||| |||||||||||||| | |  |||||||||||||||||||||| ||    |    
T  4919129 caagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaat-taacgacttcaccgaaaaagtcaattccccg 4919031  T
Q  230 acttcatcgtagaagctccctataa 254  Q
    ||||| || ||||||||||||||||    
T  4919030 acttcttcatagaagctccctataa 4919006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 42976568 - 42976325
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatc 106  Q
    |||||||||||||| | ||||  |||||| ||||||||||| ||||||| | || | ||||||||||  |||||||||| |||||||||| ||  |||      
T  42976568 ggagagagaattgatactagaagaaaaatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcataaaagaaact 42976469  T
Q  107 tgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 206  Q
    |||||||||||| || ||||||||||||||||||||||| ||||| |   ||| | |||| ||||||| ||| |||||||||||| | | | ||||||||    
T  42976468 tgtctatggtgggacttatggagcaagtgatccatattaaaatttat-tctacatgtgacgtgtcatctcttgaaatctgattggttgaattaaacgact 42976370  T
Q  207 tcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 251  Q
     || |||| |||||| ||    |||||| || |||||||||||||    
T  42976369 gcatcgaagaagtcaattgtccgacttcttcatagaagctcccta 42976325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 55919527 - 55919611
Alignment:
Q  168 tgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccctat 252  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||||||    
T  55919527 tgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccctat 55919611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 20133351 - 20133264
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  20133351 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccct 20133264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 15531345 - 15531434
Alignment:
Q  161 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||| | ||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||  |||||||  ||||||||||||||    
T  15531345 tctgacgtatcatcacttgaaatctgattggttcattcaaacgacttcactgaaaaagtcatttttctgacttctccgtagaagctccct 15531434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 47031597 - 47031670
Alignment:
Q  177 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||  ||||||| |||||||||||||||    
T  47031597 ttaaaatctgattggcccattcaaacgactgcaccgaagaagtcattttcctgacttcttcgtagaagctccct 47031670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 45989591 - 45989679
Alignment:
Q  9 agagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 97  Q
    |||||||||||||||||||  |||||| ||||||||||| | ||||| |||| | ||||||||||  |||||||||| |||||||||||    
T  45989591 agagagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 45989679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 45989748 - 45989820
Alignment:
Q  177 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    |||||||||||||||| ||||||||||||| |||| || ||||||||||  ||||||| ||||||||||||||    
T  45989748 ttaaaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttcttcgtagaagctccc 45989820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 24228277 - 24228368
Alignment:
Q  161 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccctat 252  Q
    |||||| ||||||  ||| ||||||||||||  ||||||||||||||||||||| |||||||||    ||||||||| ||||||||||||||    
T  24228277 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccctat 24228368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 42069184 - 42069257
Alignment:
Q  177 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||||||||||| | ||||||||||||| ||||||| ||||||||||  ||||||| || ||||||||||||    
T  42069184 ttaaaatctgattgacccattcaaacgactgcaccgaagaagtcattttcctgacttcttcatagaagctccct 42069257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 47031444 - 47031528
Alignment:
Q  13 agaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 97  Q
    |||||||||||||||  |||||| ||||||||||| | ||||| |||| | |||||| |||  ||||||||||||||||||||||    
T  47031444 agaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatcatg 47031528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 42069025 - 42069115
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 97  Q
    ||||| |||||||||||||||  |||||| ||||||||||| | ||||| |||| | |||||| |||  |||||||||| |||||||||||    
T  42069025 ggagaaagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatcatg 42069115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 20133484 - 20133410
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  20133484 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 55919389 - 55919463
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||| ||||| |||||||| ||||    
T  55919389 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaaataaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 46702560 - 46702596
Alignment:
Q  366 aaattcaacaacattgaacaaatctcaaaataaaccc 402  Q
    |||| |||||||||| |||||||||||||||||||||    
T  46702560 aaatccaacaacatttaacaaatctcaaaataaaccc 46702596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 14096471 - 14096280
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| |||||||||   ||||||| |||| | |||||||||||||||||||||  |||||||| |||| ||||  |||||||||||||||||||| |     
T  14096471 aaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacggttaagatcttgaaataaacttgtctatggtggaacatatgaaa 14096372  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 221  Q
    |||||||||||||||| ||||||||   || |||||| ||||||  ||| |||||||||||||| | | |||||||||||||||||||||||    
T  14096371 caagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 14096280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 37078891 - 37078801
Alignment:
Q  160 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||  ||||||| |||||||||||||||    
T  37078891 ttctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagctccct 37078801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 17690545 - 17690457
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 251  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  ||| |||||| |||||||||||||    
T  17690545 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgagttcatcatagaagctcccta 17690457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 7089167 - 7089078
Alignment:
Q  161 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||||| ||||||||||| |||||| |||||| |||||||||||||||| |||||||||| ||||  ||||||| || ||||||||||||    
T  7089167 tctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcatcgaaaaagtcgtttttctgacttcttcatagaagctccct 7089078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 16429805 - 16429724
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaag 244  Q
    |||| |||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||||  |||||||||| ||||||    
T  16429805 tgacgtgtcatcatttaaaatctgattggcctattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaag 16429724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 14810250 - 14810337
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 251  Q
    |||| |||||||| |||||||||||||||| |||||||||||| ||||| || ||||||||||  |||||||||| |||||||||||||    
T  14810250 tgacgtgtcatcatttaaaatctgattggcccattcaaacgac-tcaccaaagaagtcattttcctgacttcatcatagaagctcccta 14810337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 15330676 - 15330588
Alignment:
Q  163 tgacatgtcatcacttaaaat-ctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||| |||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| || |||||||||    
T  15330676 tgacgtgtcatcatttaaaatactgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcataaaagctccct 15330588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 18977221 - 18977308
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||| |||||||||||||||||||||||||| | | ||||||||||| |||| ||||||||||  ||||||| || ||||||||||||    
T  18977221 tgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagtcattttcctgacttcttcatagaagctccct 18977308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 33755204 - 33755287
Alignment:
Q  161 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaag 244  Q
    |||||| ||||||||||| |||||| |||| | ||||||||||||||||||||||||||| ||||  ||||||| || ||||||    
T  33755204 tctgacgtgtcatcacttgaaatctaattgacccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaag 33755287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 14810117 - 14810191
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||| ||||||||||||||| |||||||| ||||    
T  14810117 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaaataaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 16429938 - 16429864
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| |||||||||||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  16429938 aaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 16429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 15330809 - 15330735
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  15330809 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 37261699 - 37261773
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  37261699 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 37261832 - 37261911
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||| |||||||| ||||||||||||||||  |||||||||||||        |||||||||| ||||||||||| ||||||||||||    
T  37261832 tgacgtgtcatcatttaaaatctgattggcctattcaaacgactt--------aagtcattttcatgacttcatcatagaagctccct 37261911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 37079044 - 37078947
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||||||||||  | ||||  |||| | ||||||||||||||||||| |||| | || ||| |||  ||||||||| |||||||||||||| ||||    
T  37079044 ggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 37078947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 18977113 - 18977200
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtg 117  Q
    |||| ||||||||||||| ||||||| |||| | ||||||| ||  |||||||||  ||||||||||||| ||||  |||| ||||||    
T  18977113 aaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaaataaacttgtccatggtg 18977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 17690678 - 17690612
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcat 96  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||    
T  17690678 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcat 17690612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 27286379 - 27286188
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||||||  |||| ||||  |||||||||||||||||||| ||    
T  27286379 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaacttgtctatggtggaacatatgaag 27286280  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 221  Q
    |||||||||||||||| || || ||   || |||||| ||||||  ||| |||||||||||||| | | |||||||||||||||||||||||    
T  27286279 caagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 27286188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 39241793 - 39241555
Alignment:
Q  7 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatc 106  Q
    ||||||||||||| |||||||  |||||| ||||||||||| ||||||| |||| |  |||   ||   |||||||||| ||||||||||||| ||||      
T  39241793 ggagagagaattgtaattagaagaaaaatcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaact 39241697  T
Q  107 tgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattg-gctcattcaaacgac 205  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||||   || |||||| ||| |||||||||||||||||||  | ||||||||||||    
T  39241696 tgtctatggtggaacatatgaagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattgaccccattcaaacgac 39241598  T
Q  206 ttcaccgaaaaagtcattttaatgacttcatcgtagaagctcc 248  Q
    |||| |||| ||||||||||  | ||||| || ||||||||||    
T  39241597 ttcatcgaagaagtcattttcctaacttcttcatagaagctcc 39241555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 52385816 - 52386036
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 129  Q
    |||||| ||||||||| | ||||||| |||| | |||||| ||||||||||||||| | |||||| |||| ||||  |||||||||||||||||||| |     
T  52385816 aaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatcttgaaataaacttgtctatggtggaacatatgaaa 52385915  T
Q  130 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 229  Q
    || ||||||||| ||| ||||||||   || | |||  ||||||  ||| |||||||||||||| | | ||||||||||||||||||||||| |||        
T  52385916 cacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaatttccca 52386015  T
Q  230 acttcatcgtagaagctccct 250  Q
    ||||| || ||||||||||||    
T  52386016 acttcttcatagaagctccct 52386036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 12981462 - 12981376
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  12981462 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 12981376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 45348403 - 45348490
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 250  Q
    |||| |||||||| |||||||||||||| |  |||||||||||||||||||| || |||||||  |||||||||| ||||||||||||    
T  45348403 tgacgtgtcatcatttaaaatctgattgacctattcaaacgacttcaccgaagaaatcattttcctgacttcatcatagaagctccct 45348490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 45325765 - 45325840
Alignment:
Q  177 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccctat 252  Q
    |||||||||||||||| ||||||||||||| ||| ||| ||||||||||  ||||||| | ||| |||||||||||    
T  45325765 ttaaaatctgattggcccattcaaacgactgcactgaagaagtcattttcctgacttctttgtataagctccctat 45325840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 12981595 - 12981521
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  12981595 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 45348270 - 45348344
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 104  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  45348270 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 45325616 - 45325704
Alignment:
Q  9 agagagaattgaaattagaca-aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 97  Q
    ||||||||||||||||| ||| |||||| ||||||||||| | ||||| |||| | ||||||| ||  |||||||||| |||||||||||    
T  45325616 agagagaattgaaatta-acagaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatcatg 45325704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 30842 - 30928
Alignment:
Q  163 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 249  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  30842 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 30928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 30709 - 30775
Alignment:
Q  30 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcat 96  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||    
T  30709 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcat 30775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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