View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13306_low_1 (Length: 598)
Name: NF13306_low_1
Description: NF13306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13306_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 35125971 - 35125616
Alignment:
| Q |
13 |
gacatcatcccgatgataggtgtagttctggatataagaccatttaaatctagttaggtttttgtgataaataatttgaagttttcatgatacaaaatac |
112 |
Q |
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| T |
35125971 |
gacagcatcccgttgataggtgtagttctggatataagaccatttaaatctagttagatttttgtgataaataatttgaagttttcatgatacaaaatac |
35125872 |
T |
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| Q |
113 |
tctctctattcaatatcattagagcatcatttattaaaatgcattattcttattatcatcatcatccaaatattccttccttcnnnnnnnnnnnnnnnnt |
212 |
Q |
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| T |
35125871 |
tctctctattccatatcattagagcatcatttattaaaatgcattattcttattatcatcatcatccaaatattccttccttcaaaaaaaaaaaaaaaat |
35125772 |
T |
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| Q |
213 |
catcatccaaatataataaaagatgtgagcagataaatactcattttggtattgaaagtgtaaaatgtttaataatagtctctaaaaggtattaattnnn |
312 |
Q |
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| T |
35125771 |
catcatccaaatat-ataaaagatgtgagtagataaatactcattttggtattgaaagtgtaaaatgtttaataatagtctctaaaaggtattaattaaa |
35125673 |
T |
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| Q |
313 |
nnnnttcttttaagttgtttttcattagtctttctatcctcataaggaatctatctt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35125672 |
aaaaatcttttaagttgtttttcattagtctttctatcctcaaaaggaatctatctt |
35125616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 452 - 581
Target Start/End: Complemental strand, 35125572 - 35125444
Alignment:
| Q |
452 |
gatacctattatatctcaagaatctcttcttctgattctccgagattcacatttttattacacatttaaaattgtgttgaaactgtctttttatcgttga |
551 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |||| |
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| T |
35125572 |
gatacctatcatatctcaagaatctcttcttctgattctccgagattcacatttttttt-cacacttaaaattgtgttgaaactgtctttttatcattga |
35125474 |
T |
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| Q |
552 |
cataatagtgcatatgaccatactaatttg |
581 |
Q |
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| T |
35125473 |
cataatagtgcatatgatcatactaatttg |
35125444 |
T |
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